Parental gene:

RPS19, ENSAMEG00000004456

Aliases:None
Description:ribosomal protein S19 [Source:HGNC Symbol;Acc:10402]
Organism:Panda (Ailuropoda melanoleuca)
Coordinates:GL193087.1:449448..457072(+)


>ENSAMEG00000004456
GCTCTCTCTCAGATGCCTGGAGTTACTGTAAAAGACGTGAACCAGCAGGAGTTCGTCAGAGCTCTGGCAGCCTTCCTCAA
AAAGTCTGGGAAGCTGAAAGTCCCTGAATGGGTGGACACTGTCAGGCTGGCCAAGCATAAAGAGCTTGCTCCCTACGATG
AGAACTGGTTCTACACACGAGCTGCTTCCACAGCACGGCACTTGTACCTCCGGGGCGGCGCTGGGGTCGGCTCCATGACC
AAGATCTACGGGGGACGTCAGAGAAATGGGGTCATGCCCAGCCACTTCAGTAGAGGCTCCAAGAGCGTGGCCCGCAGGGT
CCTCCAAGCCCTAGAGGGGCTGAAAATGGTGGAAAAGGACCAAGATGGGGGCCGCAAACTGACACCTCAGGGACAAAGAG
ATCTGGACAGAATCGCCGGACAGGTGGCAGCTGCCAACAAGAAGCATTAG

Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000028485 ortholog_one2one 10 retrogenes
retro_cfam_1017, retro_cfam_1074, retro_cfam_1155, retro_cfam_1251, retro_cfam_1377, retro_cfam_149, retro_cfam_1998, retro_cfam_2212, retro_cfam_249, retro_cfam_499,
Callithrix jacchus ENSCJAG00000020243 possible_ortholog 5 retrogenes
retro_cjac_1968, retro_cjac_2004, retro_cjac_2094, retro_cjac_2324, retro_cjac_3,
Cavia porcellus ENSCPOG00000025140 ortholog_one2one 1 retrogene
retro_cpor_1018,
Felis catus ENSFCAG00000008125 ortholog_one2one 3 retrogenes
retro_fcat_2026, retro_fcat_543, retro_fcat_816,
Gorilla gorilla ENSGGOG00000015279 ortholog_one2one 4 retrogenes
retro_ggor_1085, retro_ggor_1503, retro_ggor_2458, retro_ggor_578,
Myotis lucifugus ENSMLUG00000006143 ortholog_one2one 5 retrogenes
retro_mluc_1316, retro_mluc_2247, retro_mluc_2426, retro_mluc_980, retro_mluc_987,
Pongo abelii ENSPPYG00000010029 ortholog_one2one 7 retrogenes
retro_pabe_1158, retro_pabe_1754, retro_pabe_1781, retro_pabe_2636, retro_pabe_430, retro_pabe_585, retro_pabe_586,
Pan troglodytes ENSPTRG00000011037 ortholog_one2one 6 retrogenes
retro_ptro_1392, retro_ptro_2269, retro_ptro_2467, retro_ptro_485, retro_ptro_612, retro_ptro_961,
Pteropus vampyrus ENSPVAG00000008980 ortholog_one2one 4 retrogenes
retro_pvam_1032, retro_pvam_1171, retro_pvam_137, retro_pvam_895,
Rattus norvegicus ENSRNOG00000048199 possible_ortholog 3 retrogenes
retro_rnor_221, retro_rnor_299, retro_rnor_51,
Sarcophilus harrisii ENSSHAG00000006831 ortholog_one2one 1 retrogene
retro_shar_731,
Sus scrofa ENSSSCG00000003042 ortholog_one2one 3 retrogenes
retro_sscr_1064, retro_sscr_308, retro_sscr_58,
Tupaia belangeri ENSTBEG00000003457 ortholog_one2one 21 retrogenes
retro_tbel_103, retro_tbel_1275, retro_tbel_1575, retro_tbel_1748, retro_tbel_1803, retro_tbel_1888, retro_tbel_2104, retro_tbel_2521, retro_tbel_2554, retro_tbel_2971, retro_tbel_3008, retro_tbel_3339, retro_tbel_3388, retro_tbel_345, retro_tbel_3607, retro_tbel_3860, retro_tbel_4425, retro_tbel_673, retro_tbel_875, retro_tbel_913, retro_tbel_945,
Tursiops truncatus ENSTTRG00000008278 ortholog_one2one 5 retrogenes
retro_ttru_1308, retro_ttru_1608, retro_ttru_1686, retro_ttru_336, retro_ttru_593,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_amel_193 90.21 95.97
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2. retro_amel_550 66.67 90.60
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3. retro_amel_1418 65.05 67.79
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4. retro_amel_1816 84.50 86.58
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Download FASTA sequences of all ENSAMEG00000004456 retrocopies