RetrogeneDB ID: | retro_ggor_1713 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 2b:15201495..15201714(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000007883 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DYNLT1 | ||
Ensembl ID: | ENSGGOG00000009979 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 56.16 % |
Parental protein coverage: | 64.6 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | NQWTTNVVEQTLSQLTKLGKPFKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAF |
.Q.....VEQ.L..L.KLGK...YIVTC...QK...G.HTASSCFWD...DG.CT.RWEN.TM.CIV..F | |
Retrocopy | SQHQPSIVEQSLTHLVKLGKAYTYIVTCAVVQKSAYGFHTASSCFWDTTSDGTCTIRWENWTMNCIVNVF |
Parental | GLS |
... | |
Retrocopy | AIA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 6 .14 RPM | 8 .92 RPM |
SRP007412_cerebellum | 2 .17 RPM | 11 .90 RPM |
SRP007412_heart | 0 .41 RPM | 16 .48 RPM |
SRP007412_kidney | 4 .13 RPM | 80 .84 RPM |
SRP007412_liver | 1 .42 RPM | 25 .22 RPM |
SRP007412_testis | 5 .39 RPM | 109 .30 RPM |