RetrogeneDB ID: | retro_itri_1269 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393420.1:1139973..1140310(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DYNLT1 | ||
Ensembl ID: | ENSSTOG00000006273 | ||
Aliases: | None | ||
Description: | dynein, light chain, Tctex-type 1 [Source:HGNC Symbol;Acc:11697] |
Percent Identity: | 82.61 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MEDFQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKPFKYIVTCVIM |
M.DFQAA.ETA.VVDEVSNI.KEAIESAIG.NAYQHS.VNQ.TTNVVEQTLSQLTKLGKP.KYIVTCVI. | |
Retrocopy | MKDFQAAKETALVVDEVSNIIKEAIESAIGNNAYQHSEVNQLTTNVVEQTLSQLTKLGKPLKYIVTCVIF |
Parental | QKNGAG-LHTASSCFWDSSTDGSCTVRWENKTMYCIV-SAFGLSI |
.....G.LHTASSCFWDSS.DGSCTV.WENKT.YCIV.S.FGLSI | |
Retrocopy | YAKKNG<LHTASSCFWDSSVDGSCTVQWENKTLYCIV<STFGLSI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000004472 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000003656 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000003718 | 3 retrocopies | |
Dipodomys ordii | ENSDORG00000014053 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000013883 | 1 retrocopy | |
Homo sapiens | ENSG00000146425 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009979 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000009483 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001922 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000019454 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000007654 | 1 retrocopy | |
Mus musculus | ENSMUSG00000095677 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000013012 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000000494 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000017135 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000018746 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000006273 | 1 retrocopy |
retro_itri_1269 ,
|
Tarsius syrichta | ENSTSYG00000003114 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000011340 | 2 retrocopies |