RetrogeneDB ID: | retro_btau_220 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 1:137783208..137783550(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000035654 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DYNLT1 | ||
Ensembl ID: | ENSBTAG00000004472 | ||
Aliases: | DYNLT1, TCTEL1 | ||
Description: | Dynein light chain Tctex-type 1 [Source:UniProtKB/Swiss-Prot;Acc:P63171] |
Percent Identity: | 97.35 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKPFKYIVTCVIM |
MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQH.KVN.WTTNVVEQTLSQLTKLGKPFKYIVTCVIM | |
Retrocopy | MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHGKVNKWTTNVVEQTLSQLTKLGKPFKYIVTCVIM |
Parental | QKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI |
QKNGAGLH.ASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI | |
Retrocopy | QKNGAGLHRASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 9 .30 RPM |
ERP005899_muscle | 0 .16 RPM | 17 .84 RPM |
SRP017611_brain | 0 .05 RPM | 14 .21 RPM |
SRP017611_kidney | 0 .06 RPM | 28 .75 RPM |
SRP017611_liver | 0 .08 RPM | 16 .16 RPM |
SRP030211_testis | 0 .36 RPM | 102 .83 RPM |