Parental gene:

DYNLT1, ENSPTRG00000018746

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:6:160391567..160400412(-)


>ENSPTRG00000018746
ATGGAAGACTACCAGGCTGCGGAGGAGACTGCTTTTGTTGTTGATGAAGTGAGCAACATTGTAAAAGAGGCTATAGAAAG
CGCAATTGGTGGTAACGCTTATCAACACAGCAAAGTGAACCAGTGGACCACAAATGTAGTAGAACAAACTTTAAGCCAAC
TCACCAAGCTGGGAAAACCATTTAAATACATCGTGACCTGTGTAATTATGCAGAAGAATGGAGCTGGATTACACACAGCA
AGTTCCTGCTTCTGGGACAGCTCTACTGACGGGAGCTGCACTGTGCGATGGGAGAATAAGACCATGTACTGCATCGTCAG
TGCCTTCGGACTGTCTATTTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 11 .10 RPM
SRP007412_cerebellum 14 .05 RPM
SRP007412_heart 53 .54 RPM
SRP007412_kidney 80 .16 RPM
SRP007412_liver 117 .84 RPM
SRP007412_testis 143 .43 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000004472 ortholog_one2many 1 retrogene
retro_btau_220,
Choloepus hoffmanni ENSCHOG00000003656 ortholog_one2one 1 retrogene
retro_chof_2043,
Callithrix jacchus ENSCJAG00000003718 ortholog_one2one 3 retrogenes
retro_cjac_2076, retro_cjac_2301, retro_cjac_2622,
Dipodomys ordii ENSDORG00000014053 ortholog_one2one 1 retrogene
retro_dord_60,
Echinops telfairi ENSETEG00000013883 ortholog_one2one 1 retrogene
retro_etel_202,
Homo sapiens ENSG00000146425 ortholog_one2one 2 retrogenes
retro_hsap_1716, retro_hsap_2910,
Gorilla gorilla ENSGGOG00000009979 ortholog_one2one 3 retrogenes
retro_ggor_1285, retro_ggor_1713, retro_ggor_2015,
Microcebus murinus ENSMICG00000009483 ortholog_one2one 1 retrogene
retro_mmur_786,
Myotis lucifugus ENSMLUG00000001922 ortholog_one2many 2 retrogenes
retro_mluc_111, retro_mluc_282,
Macaca mulatta ENSMMUG00000019454 ortholog_one2one 2 retrogenes
retro_mmul_1213, retro_mmul_684,
Monodelphis domestica ENSMODG00000007654 ortholog_one2one 1 retrogene
retro_mdom_606,
Mus musculus ENSMUSG00000095677 ortholog_one2many 1 retrogene
retro_mmus_2882,
Oryctolagus cuniculus ENSOCUG00000013012 ortholog_one2one 2 retrogenes
retro_ocun_1330, retro_ocun_1599,
Otolemur garnettii ENSOGAG00000000494 ortholog_one2one 2 retrogenes
retro_ogar_1176, retro_ogar_2889,
Pongo abelii ENSPPYG00000017135 ortholog_one2one 2 retrogenes
retro_pabe_1432, retro_pabe_2424,
Pan troglodytes ENSPTRG00000021793 within_species_paralog 1 retrogene
retro_ptro_1417,
Ictidomys tridecemlineatus ENSSTOG00000006273 ortholog_one2one 1 retrogene
retro_itri_1269,
Tarsius syrichta ENSTSYG00000003114 ortholog_one2one 1 retrogene
retro_tsyr_236,
Tursiops truncatus ENSTTRG00000011340 ortholog_one2one 2 retrogenes
retro_ttru_912, retro_ttru_942,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1230 86.96 100.00
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2. retro_ptro_1966 89.53 76.11
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Download FASTA sequences of all ENSPTRG00000018746 retrocopies