RetrogeneDB ID:

retro_ggor_2979

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:X:12743466..12744029(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MRPL35
Ensembl ID:ENSGGOG00000026769
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_2979
ATGGCTTCCTCTGCCTTTGCTGGTGCGATGAGAGCAGCTTCAGGAATCTATGGCTCCTGAATATTTTTGCATCTCCAACC
CACCGAAACTGTGCCAGGAATGCCTCTCTTATTTCTGCATTCTCTACTGGACGTTTTAGTCATATTCGGACACCATTTGT
TTCCTCCACTCCCAGGCTTATCACATCTGTCAGAAACCTGACATGTGGGCATACTGCAGTGTTCCCCAACAGAGTGGCCC
CCTTGCTTCCAAGTGTCCTGAAGCTGCCAGTCAGAACTGTAATATACGTCAGTACACAAAAAGGCAAGAGAAAAACTGTG
AAAGCTGTTATCTATAGGTTTTTTCGACTTCATTCTGGCCTTTGGGTGAGGAGAAAGGCTAGTTATAAGAAAAAATTCTG
GAAAAAGACACCTGCAAGAGAAAAGCAATTGAGGGAATTTGTGTTCTGCAATAAAACCCAGAGTAAACTCTTAGATAAAA
TGACAGTGTCCTTCTGGAAGAGGTGAAACTTGTATGCTGATAATCCTTATCAGAAATATCTTTATGAAACAAACCTGAAA
GTA

ORF - retro_ggor_2979 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 78.31 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMAASAFAGAVRAASGI-LRPLNILASSTYRNCVKNASLISALSTGRFSHIQTPVVSSTPRLTTSERNLTC
MA.SAFAGA.RAASGI.L..LNI.AS.T.RNC..NASLISA.STGRFSHI.TP.VSSTPRL.TS.RNLTC
RetrocopyMASSAFAGAMRAASGI<LWLLNIFASPTHRNCARNASLISAFSTGRFSHIRTPFVSSTPRLITSVRNLTC
ParentalGHTSAILNRVAPVLPSVLKLPVRSLTYFSARKGKRKTVKAVIDRFLRLHCGLWVRRKAGYKKKLWKKTPA
GHT....NRVAP.LPSVLKLPVR...Y.S..KGKRKTVKAVI.RF.RLH.GLWVRRKA.YKKK.WKKTPA
RetrocopyGHTAVFPNRVAPLLPSVLKLPVRTVIYVSTQKGKRKTVKAVIYRFFRLHSGLWVRRKASYKKKFWKKTPA
ParentalRKKRLREFVFCNKTQSKLLDKMTTSFWKRRNWYVDDPYQKYHDRTNLKV
R.K.LREFVFCNKTQSKLLDKMT.SFWKR.N.Y.D.PYQKY...TNLKV
RetrocopyREKQLREFVFCNKTQSKLLDKMTVSFWKR*NLYADNPYQKYLYETNLKV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 53 .13 RPM
SRP007412_cerebellum 0 .00 RPM 33 .17 RPM
SRP007412_heart 0 .00 RPM 20 .29 RPM
SRP007412_kidney 0 .00 RPM 29 .36 RPM
SRP007412_liver 0 .00 RPM 16 .06 RPM
SRP007412_testis 0 .00 RPM 18 .13 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2979 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_2979 has 3 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_4784
Pan troglodytes retro_ptro_3185
Pongo abelii retro_pabe_3724

Parental genes homology:
Parental genes homology involve 11 parental genes, and 29 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000194671 retrocopy
Dasypus novemcinctus ENSDNOG000000083291 retrocopy
Homo sapiens ENSG000001323134 retrocopies
Gorilla gorilla ENSGGOG00000026769 3 retrocopies
retro_ggor_2315, retro_ggor_2979 , retro_ggor_526,
Macropus eugenii ENSMEUG000000047731 retrocopy
Mus musculus ENSMUSG000000529621 retrocopy
Otolemur garnettii ENSOGAG000000040481 retrocopy
Pan troglodytes ENSPTRG000000121524 retrocopies
Rattus norvegicus ENSRNOG000000085461 retrocopy
Tupaia belangeri ENSTBEG0000001536610 retrocopies
Tarsius syrichta ENSTSYG000000077132 retrocopies



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