RetrogeneDB ID: | retro_tsyr_264 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | GeneScaffold_6614:78399..78828(+) | ||
Located in intron of: | ENSTSYG00000004970 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL35 | ||
Ensembl ID: | ENSTSYG00000007713 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L35 [Source:HGNC Symbol;Acc:14489] |
Percent Identity: | 78.47 % |
Parental protein coverage: | 76.6 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | LNILASSAYRNCAKNASLISALSTGHFSHIQTPVVSSAPRLITSVRNLTYGHTATIFNRVAPLLPNVLKL |
LNILASSA.RNCAKN....SALSTGHFSH.Q..VVSSAP.LITSVRNLT.G.TATI.NRVAPL.PNVLKL | |
Retrocopy | LNILASSA*RNCAKNKRT-SALSTGHFSHMQRLVVSSAPKLITSVRNLTSGCTATILNRVAPLFPNVLKL |
Parental | PIRTVTYFSSRKGKRKTVKAVIYRFLRLHSGLWLRRKAGYKKKLWKKTNARKKRLREFVFCNKTQSKLLD |
P.RTVTYFSS.KGKRKTVKAVIYRFLR.HSGLWL.RKAGYKKKL.............FVFCNKTQSKLLD | |
Retrocopy | PVRTVTYFSSQKGKRKTVKAVIYRFLRHHSGLWLKRKAGYKKKL*XXXXXXXXXXXXFVFCNKTQSKLLD |
Parental | KMTT |
KMT. | |
Retrocopy | KMTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000019467 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000008329 | 1 retrocopy | |
Homo sapiens | ENSG00000132313 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000026769 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000004773 | 1 retrocopy | |
Mus musculus | ENSMUSG00000052962 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002756 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000004048 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012214 | 5 retrocopies | |
Pan troglodytes | ENSPTRG00000012152 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000008546 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000015366 | 10 retrocopies | |
Tarsius syrichta | ENSTSYG00000007713 | 2 retrocopies |
retro_tsyr_1128, retro_tsyr_264 ,
|