RetrogeneDB ID: | retro_ggor_526 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 10:87179820..87180382(+) | ||
Located in intron of: | ENSGGOG00000005390 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL35 | ||
Ensembl ID: | ENSGGOG00000026769 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.01 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAASAFAGAVRAASGILRPLNILASSTYRNCVKNASLISALSTGRFSHIQTPVVSSTPRLTTSERNLTCG |
.AASAFAGAVRAASGIL.PLNILASS.Y.NCVKNASLISALSTGR.SHIQTPVVSSTPRLTTSERNLTCG | |
Retrocopy | IAASAFAGAVRAASGILWPLNILASSAYQNCVKNASLISALSTGRSSHIQTPVVSSTPRLTTSERNLTCG |
Parental | HTSAILNRVAPVLPSVLKLPVRSLTYFSARKGKRKTVKAVIDRFLRLHCGLWVRRKAGYKKKLWKKTPAR |
HTSAILNRVA..LPSVLKLP.RSLTY.S.RKGKRK.VKAVI.RFLRLHCGLW.RR.AGYKKKLWKK.PAR | |
Retrocopy | HTSAILNRVALLLPSVLKLPGRSLTYVSTRKGKRKIVKAVIYRFLRLHCGLWMRR-AGYKKKLWKKAPAR |
Parental | KKRLREFVFCNKTQSKLL-DKMTTSFWKRRNWYVDDPYQKYHDRTNLKV |
KKRLREFVFCNKTQSKLL.DKMTTSFWKRRNWYV.DPYQKYHDRTNLKV | |
Retrocopy | KKRLREFVFCNKTQSKLL>DKMTTSFWKRRNWYVHDPYQKYHDRTNLKV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 53 .13 RPM |
SRP007412_cerebellum | 0 .04 RPM | 33 .17 RPM |
SRP007412_heart | 0 .00 RPM | 20 .29 RPM |
SRP007412_kidney | 0 .12 RPM | 29 .36 RPM |
SRP007412_liver | 0 .16 RPM | 16 .06 RPM |
SRP007412_testis | 0 .00 RPM | 18 .13 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_595 |
Pan troglodytes | retro_ptro_438 |
Pongo abelii | retro_pabe_595 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000019467 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000008329 | 1 retrocopy | |
Homo sapiens | ENSG00000132313 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000026769 | 3 retrocopies |
retro_ggor_2315, retro_ggor_2979, retro_ggor_526 ,
|
Macropus eugenii | ENSMEUG00000004773 | 1 retrocopy | |
Mus musculus | ENSMUSG00000052962 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004048 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012152 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000008546 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000015366 | 10 retrocopies | |
Tarsius syrichta | ENSTSYG00000007713 | 2 retrocopies |