RetrogeneDB ID: | retro_ggor_925 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 13:12397760..12398897(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000175354 | ||
Ensembl ID: | ENSGGOG00000010259 | ||
Aliases: | None | ||
Description: | Tyrosine-protein phosphatase non-receptor type [Source:UniProtKB/TrEMBL;Acc:G3R421] |
Percent Identity: | 75.98 % |
Parental protein coverage: | 91.81 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MPTTIEREFEELDTQRRWQPLYLEIRNESHDYPHRVAKFPENRNRNRYRDVSPYDHSRVKLQNAENDYIN |
MPT.IEREFEELD.Q.RWQ..YLEIRNESHDY.HRVAKFPENRNRNRYRDVSPYDHSRVKLQN.ENDYIN | |
Retrocopy | MPTIIEREFEELDAQHRWQLPYLEIRNESHDYLHRVAKFPENRNRNRYRDVSPYDHSRVKLQNTENDYIN |
Parental | ASLVDIEEAQRSYILTQGPLPNTCCHFWLMVWQQKTKAVVMLNRIVEKESVKCAQYWPTDDQEMLFKETG |
ASLVD.EEA.RSYI.TQGPLPN.CCHFWL.V................KESVKCAQYWPTDDQ.MLFKETG | |
Retrocopy | ASLVDTEEARRSYI*TQGPLPNMCCHFWLTVXXXXXXXXXXXXXXXXKESVKCAQYWPTDDQKMLFKETG |
Parental | FSVKL-LSEDVKSYYTVHLLQLENINSGETRTISHFHYTTWPDFGVPESPASFLNFLFKVRESGSLNPDH |
F.VKL.LSEDVKSY.TVHLL.LENINSGETRTISH..YTTWPDFGVPES.ASFLNFL.KVRESGSLNPDH | |
Retrocopy | FNVKL<LSEDVKSYHTVHLLRLENINSGETRTISHLYYTTWPDFGVPESTASFLNFLLKVRESGSLNPDH |
Parental | GPAVIHCSAGIGRSGTFSLVDTCLVLMEKGDDINIKQVLLNMRKYRMGLIQTPDQLRFSYMAIIEGAKCI |
GPAVIHCS.G.G.SGT.SLVD.CLVLM.KGD.INIKQVLLN.RKY.MGLIQTPDQL.FSYMAIIEGAKCI | |
Retrocopy | GPAVIHCSEGTGCSGTCSLVDACLVLMGKGDYINIKQVLLNRRKY*MGLIQTPDQLTFSYMAIIEGAKCI |
Parental | KGDSSIQKRWKELSKEDLSPAFDHSPNKIMTEKYNGNRIGLEEEKLTGDRCTG-LSSKMQDTMEENSESA |
K.DSSIQKRWKE.SKE.L.PAFDHSPNKIMTEKYNGNRIGLEEEKLTGDRCT......M....E...... | |
Retrocopy | KVDSSIQKRWKEFSKENLAPAFDHSPNKIMTEKYNGNRIGLEEEKLTGDRCTV>MQDTMEENSENALRKH |
Parental | LRKRIREDRKATTAQKVQQMKQRLNENERKRKR |
..............Q..Q......NE..RKR.R | |
Retrocopy | ILEERKATTAQKVQQMKQRLNE--NEQKRKRPR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 3 .55 RPM |
SRP007412_cerebellum | 0 .08 RPM | 5 .44 RPM |
SRP007412_heart | 0 .06 RPM | 0 .66 RPM |
SRP007412_kidney | 0 .04 RPM | 6 .87 RPM |
SRP007412_liver | 0 .03 RPM | 4 .01 RPM |
SRP007412_testis | 0 .00 RPM | 9 .22 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000867 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005102 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000016588 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000005636 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000005577 | 2 retrocopies | |
Homo sapiens | ENSG00000175354 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000010259 | 2 retrocopies |
retro_ggor_453, retro_ggor_925 ,
|
Gorilla gorilla | ENSGGOG00000010689 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000011818 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005156 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000021422 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009074 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000028605 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008983 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000009884 | 2 retrocopies |