Parental gene:

PTPN2, ENSG00000175354

Aliases:PTPN2, PTN2, PTPT, TC-PTP, TCELLPTP, TCPTP
Description:protein tyrosine phosphatase, non-receptor type 2 [Source:HGNC Symbol;Acc:9650]
Organism:Human (Homo sapiens)
Coordinates:18:12785476..12929642(-)


>ENSG00000175354
ATGCCCACCACCATCGAGCGGGAGTTCGAAGAGTTGGATACTCAGCGTCGCTGGCAGCCGCTGTACTTGGAAATTCGAAA
TGAGTCCCATGACTATCCTCATAGAGTGGCCAAGTTTCCAGAAAACAGAAATCGAAACAGATACAGAGATGTAAGCCCAT
ATGATCACAGTCGTGTTAAACTGCAAAATGCTGAGAATGATTATATTAATGCCAGTTTAGTTGACATAGAAGAGGCACAA
AGGAGTTACATCTTAACACAGGGTCCACTTCCTAACACATGCTGCCATTTCTGGCTTATGGTTTGGCAGCAGAAGACCAA
AGCAGTTGTCATGCTGAACCGCATTGTGGAGAAAGAATCGGTTAAATGTGCACAGTACTGGCCAACAGATGACCAAGAGA
TGCTGTTTAAAGAAACAGGATTCAGTGTGAAGCTCTTGTCAGAAGATGTGAAGTCGTATTATACAGTACATCTACTACAA
TTAGAAAATATCAATAGTGGTGAAACCAGAACAATATCTCACTTTCATTATACTACCTGGCCAGATTTTGGAGTCCCTGA
ATCACCAGCTTCATTTCTCAATTTCTTGTTTAAAGTGAGAGAATCTGGCTCCTTGAACCCTGACCATGGGCCTGCGGTGA
TCCACTGTAGTGCAGGCATTGGGCGCTCTGGCACCTTCTCTCTGGTAGACACTTGTCTTGTTTTGATGGAAAAAGGAGAT
GATATTAACATAAAACAAGTGTTACTGAACATGAGAAAATACCGAATGGGTCTTATTCAGACCCCAGATCAACTGAGATT
CTCATACATGGCTATAATAGAAGGAGCAAAATGTATAAAGGGAGATTCTAGTATACAGAAACGATGGAAAGAACTTTCTA
AGGAAGACTTATCTCCTGCCTTTGATCATTCACCAAACAAAATAATGACTGAAAAATACAATGGGAACAGAATAGGTCTA
GAAGAAGAAAAACTGACAGGTGACCGATGTACAGGACTTTCCTCTAAAATGCAAGATACAATGGAGGAGAACAGTGAGAG
TGCTCTACGGAAACGTATTCGAGAGGACAGAAAGGCCACCACAGCTCAGAAGGTGCAGCAGATGAAACAGAGGCTAAATG
AGAATGAACGAAAAAGAAAAAGGTGGTTATATTGGCAACCTATTCTCACTAAGATGGGGTTTATGTCAGTCATTTTGGTT
GGCGCTTTTGTTGGCTGGACACTGTTTTTTCAGCAAAATGCCCTATAA

Library Parental gene expression (RPM)
bodymap2_liver 12 .53 RPM
bodymap2_lung 43 .25 RPM
bodymap2_breast 23 .35 RPM
bodymap2_adipose 22 .36 RPM
bodymap2_adrenal 53 .96 RPM
bodymap2_skeletal_muscle 12 .09 RPM
bodymap2_thyroid 26 .36 RPM
bodymap2_prostate 28 .87 RPM
bodymap2_colon 23 .03 RPM
bodymap2_testis 35 .31 RPM
bodymap2_brain 16 .55 RPM
bodymap2_heart 10 .91 RPM
bodymap2_white_blood_cells 55 .32 RPM
bodymap2_lymph_node 54 .88 RPM
bodymap2_ovary 48 .85 RPM
bodymap2_kidney 24 .47 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000000867 ortholog_one2one 1 retrogene
retro_chof_2231,
Callithrix jacchus ENSCJAG00000005102 ortholog_one2one 1 retrogene
retro_cjac_1577,
Dasypus novemcinctus ENSDNOG00000016588 ortholog_one2one 1 retrogene
retro_dnov_1466,
Erinaceus europaeus ENSEEUG00000005636 ortholog_one2one 1 retrogene
retro_eeur_370,
Echinops telfairi ENSETEG00000005577 ortholog_one2one 2 retrogenes
retro_etel_1743, retro_etel_1942,
Homo sapiens ENSG00000179295 other_paralog 5 retrogenes
retro_hsap_2823, retro_hsap_3061, retro_hsap_3302, retro_hsap_3670, retro_hsap_4062,
Gorilla gorilla ENSGGOG00000010259 ortholog_one2many 2 retrogenes
retro_ggor_453, retro_ggor_925,
Loxodonta africana ENSLAFG00000011818 ortholog_one2many 1 retrogene
retro_lafr_701,
Macropus eugenii ENSMEUG00000005156 ortholog_one2one 1 retrogene
retro_meug_653,
Monodelphis domestica ENSMODG00000021422 ortholog_one2one 1 retrogene
retro_mdom_1225,
Nomascus leucogenys ENSNLEG00000009074 ortholog_one2one 3 retrogenes
retro_nleu_2112, retro_nleu_351, retro_nleu_894,
Otolemur garnettii ENSOGAG00000028605 ortholog_one2one 1 retrogene
retro_ogar_3429,
Pongo abelii ENSPPYG00000008983 ortholog_one2one 3 retrogenes
retro_pabe_1077, retro_pabe_1144, retro_pabe_989,
Pan troglodytes ENSPTRG00000009884 ortholog_one2one 2 retrogenes
retro_ptro_361, retro_ptro_813,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_480 91.96 86.05
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2. retro_hsap_1186 75.52 99.74
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Download FASTA sequences of all ENSG00000175354 retrocopies