Parental gene: | PTPN2, ENSPPYG00000008983 |
| Aliases: | None |
| Description: | protein tyrosine phosphatase, non-receptor type 2 [Source:HGNC Symbol;Acc:9650] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 18:19126829..19231710(+) |
>ENSPPYG00000008983
ATGCCCACCACCATCGAGCGGGAGTTCGAAGAGGTGGATACTCAGCGTCGCTGGCAGCCTCTGTACTTGGAAATTCGAAA
TGAGTCCCATGACTATCCTCATAGAGTGGCCAAGTTTCCAGAAAACAGAAATCGAAACAGATACAGAGATGTAAGCCCAT
ATGATCACAGTCGTGTTAAACTGCAAAATGCTGAGAATGATTATATTAATGCCAGTTTAGTTGACATAGAAGAGGCACAA
AGGAGTTACATCTTAACACAGGGTCCACTTCCTAACACATGCTGCCATTTCTGGCTTATGGTTTGGCAGCAGAAGACCAA
AGCAGTTGTCATGCTGAACCGCATTGTGGAGAAAGAATCGGTTAAATGTGCACAGTACTGGCCAACAGATGACCAAGAGA
TGCTGTTTAAAGAAACAGGATTCAGTGTGAAGCTCTTGTCAGAAGATGTGAAGTCGTATTATACAGTACATCTACTACAA
TTAGAAAATATCAATAGTGGTGAAACCAGAACAATATCTCACTTTCATTATACTACCTGGCCAGATTTTGGAGTCCCTGA
ATCACCAGCTTCATTTCTCAATTTCTTGTTTAAAGTGAGAGAATCTGGCTCCTTGAACCCTGACCATGGGCCTGCGGTGA
TCCACTGTAGTGCAGGCATTGGGCGCTCCGGCACCTTCTCTCTGGTAGACACTTGTCTTGTTTTGATGGAAAAAGGAGAT
GATATTAACATTAAACAGGTGTTACTGAACATGAGAAAATACCGAATGGGTCTTATTCAGACCCCAGATCAACTGAGATT
CTCATACATGGCTATAATAGAAGGAGCAAAATGTATAAAGGGAGATTCTAGTATACAGAAACGATGGAAAGAACTTTCTA
AGGAAGACTTATCTCCTGCCTTTGATCATTCACCAAACAAAATAATGACTGAAAAATTCAATGGGAACAGAATAGGTCTA
GAAGAAGAAAAACTGACAGGTGACCGATGTACAGGACTTTCCTCTAAAATGCAAGATACAGTGGAGGAGAATAGTGAGAG
TGCTCTACGGAAACGTATTCGAGAGGACAGAAAGGCCACCACAGCTCAGAAGGTGCAGCAGATGAAACAGAGGCTAAATG
AGAATGAACGAAAAAGAAAAAGGCCAAGATTGACAGACACCTAA
ATGCCCACCACCATCGAGCGGGAGTTCGAAGAGGTGGATACTCAGCGTCGCTGGCAGCCTCTGTACTTGGAAATTCGAAA
TGAGTCCCATGACTATCCTCATAGAGTGGCCAAGTTTCCAGAAAACAGAAATCGAAACAGATACAGAGATGTAAGCCCAT
ATGATCACAGTCGTGTTAAACTGCAAAATGCTGAGAATGATTATATTAATGCCAGTTTAGTTGACATAGAAGAGGCACAA
AGGAGTTACATCTTAACACAGGGTCCACTTCCTAACACATGCTGCCATTTCTGGCTTATGGTTTGGCAGCAGAAGACCAA
AGCAGTTGTCATGCTGAACCGCATTGTGGAGAAAGAATCGGTTAAATGTGCACAGTACTGGCCAACAGATGACCAAGAGA
TGCTGTTTAAAGAAACAGGATTCAGTGTGAAGCTCTTGTCAGAAGATGTGAAGTCGTATTATACAGTACATCTACTACAA
TTAGAAAATATCAATAGTGGTGAAACCAGAACAATATCTCACTTTCATTATACTACCTGGCCAGATTTTGGAGTCCCTGA
ATCACCAGCTTCATTTCTCAATTTCTTGTTTAAAGTGAGAGAATCTGGCTCCTTGAACCCTGACCATGGGCCTGCGGTGA
TCCACTGTAGTGCAGGCATTGGGCGCTCCGGCACCTTCTCTCTGGTAGACACTTGTCTTGTTTTGATGGAAAAAGGAGAT
GATATTAACATTAAACAGGTGTTACTGAACATGAGAAAATACCGAATGGGTCTTATTCAGACCCCAGATCAACTGAGATT
CTCATACATGGCTATAATAGAAGGAGCAAAATGTATAAAGGGAGATTCTAGTATACAGAAACGATGGAAAGAACTTTCTA
AGGAAGACTTATCTCCTGCCTTTGATCATTCACCAAACAAAATAATGACTGAAAAATTCAATGGGAACAGAATAGGTCTA
GAAGAAGAAAAACTGACAGGTGACCGATGTACAGGACTTTCCTCTAAAATGCAAGATACAGTGGAGGAGAATAGTGAGAG
TGCTCTACGGAAACGTATTCGAGAGGACAGAAAGGCCACCACAGCTCAGAAGGTGCAGCAGATGAAACAGAGGCTAAATG
AGAATGAACGAAAAAGAAAAAGGCCAAGATTGACAGACACCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 2 .21 RPM |
| SRP007412_cerebellum | 7 .17 RPM |
| SRP007412_heart | 2 .11 RPM |
| SRP007412_kidney | 3 .41 RPM |
| SRP007412_liver | 7 .96 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000000867 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000005102 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000016588 | ortholog_one2one | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000005636 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000005577 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000175354 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000010259 | ortholog_one2many | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000011818 | ortholog_one2many | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000005156 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000021422 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000009074 | ortholog_one2one | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000028605 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000004976 | other_paralog | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000009884 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_989 | 78.41 | 99.74 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_1077 | 78.86 | 94.83 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_1144 | 99.00 | 77.78 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000008983 retrocopies