RetrogeneDB ID: | retro_hsap_1186 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 13:31127807..31128965(+) | ||
Located in intron of: | ENSG00000189403 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000224117 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTPN2 | ||
Ensembl ID: | ENSG00000175354 | ||
Aliases: | PTPN2, PTN2, PTPT, TC-PTP, TCELLPTP, TCPTP | ||
Description: | protein tyrosine phosphatase, non-receptor type 2 [Source:HGNC Symbol;Acc:9650] |
Percent Identity: | 75.52 % |
Parental protein coverage: | 99.74 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MPTTIEREFEELDTQRRWQPLYLEIRNESHDYPHRVAKFPENRNRNRYRDVSPYDHSRVKLQNAENDYIN |
MPT.IEREF.ELD.Q.RWQ..YLEIRNESHDY.HRVAKFPENRNRNRYRDVSPYDHSRVKLQN.ENDYIN | |
Retrocopy | MPTIIEREFKELDAQHRWQLPYLEIRNESHDYLHRVAKFPENRNRNRYRDVSPYDHSRVKLQNTENDYIN |
Parental | ASLVDIEEAQRSYILTQGPLPNTCCHFWLMVWQQKTKAVVMLNRIVEKESVKCAQYWPTDDQEMLFKETG |
ASLVDIEEA.RSYILT.GPLPN.CCHFWL.V.................ESVKCAQYWPTDDQ.MLFKETG | |
Retrocopy | ASLVDIEEARRSYILTPGPLPNMCCHFWLTVXXXXXXXXXXXXXXXXXESVKCAQYWPTDDQKMLFKETG |
Parental | FSVKL-LSEDVKSYYTVHLLQLENINSGETRTISHFHYTTWPDFGVPESPASFLNFLFKVRESGSLNPDH |
F.VKL.LSEDVKSYYTVHLL.LENINSGETRTISH.HYTTWPDFGVPESPASFLNFL.KVRESGSLNPDH | |
Retrocopy | FNVKL<LSEDVKSYYTVHLLRLENINSGETRTISHLHYTTWPDFGVPESPASFLNFLLKVRESGSLNPDH |
Parental | GPAVIHCSAGIGRSGTFSLVDTCLVLMEKGDDINIKQVLLNMRKYRMGLIQTPDQLRFSYMAIIEGAKCI |
GPAVIHCS.G.G..GTFSLVD.CLVLM.KGD.INIKQVLLNMRKY.MGLIQTPDQLRFSYMAIIEGAKCI | |
Retrocopy | GPAVIHCSEGTGCTGTFSLVDACLVLMGKGDYINIKQVLLNMRKY*MGLIQTPDQLRFSYMAIIEGAKCI |
Parental | KGDSSIQKRWKELSKEDLSPAFDHSPNKIMTEKYNGNRIGLEEEKLTGDRCTG-LSSKMQDTMEENSESA |
K.DSSIQKRWKE.SKE.L.PAFDHSPNKIMTEKYNGNRIGLEEEKLTGDRCT......M....E...... | |
Retrocopy | KVDSSIQKRWKEFSKENLAPAFDHSPNKIMTEKYNGNRIGLEEEKLTGDRCTV>MQDTMEENSENALRKH |
Parental | LRKRIREDRKATTAQKVQQMKQRLNENERKRKRPRLTD |
..............Q..Q..........R.R..P...D | |
Retrocopy | ILEDRKATTAQKVQQMKQRLNENEQKRKRPR*TPNIHD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .04 RPM | 22 .36 RPM |
bodymap2_adrenal | 0 .10 RPM | 53 .96 RPM |
bodymap2_brain | 0 .16 RPM | 16 .55 RPM |
bodymap2_breast | 0 .00 RPM | 23 .35 RPM |
bodymap2_colon | 0 .00 RPM | 23 .03 RPM |
bodymap2_heart | 0 .09 RPM | 10 .91 RPM |
bodymap2_kidney | 0 .00 RPM | 24 .47 RPM |
bodymap2_liver | 0 .00 RPM | 12 .53 RPM |
bodymap2_lung | 0 .00 RPM | 43 .25 RPM |
bodymap2_lymph_node | 0 .00 RPM | 54 .88 RPM |
bodymap2_ovary | 0 .17 RPM | 48 .85 RPM |
bodymap2_prostate | 0 .00 RPM | 28 .87 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 12 .09 RPM |
bodymap2_testis | 0 .00 RPM | 35 .31 RPM |
bodymap2_thyroid | 0 .00 RPM | 26 .36 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 55 .32 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_813 |
Pongo abelii | retro_pabe_989 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000867 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005102 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000016588 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000005636 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000005577 | 2 retrocopies | |
Homo sapiens | ENSG00000175354 | 2 retrocopies |
retro_hsap_1186 , retro_hsap_480,
|
Homo sapiens | ENSG00000179295 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000010259 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000011818 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005156 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000021422 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009074 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000028605 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008983 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000009884 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .04 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .03 RPM |
FIN_HG00183 | 0 .03 RPM |
FIN_HG00277 | 0 .04 RPM |
FIN_HG00315 | 0 .03 RPM |
FIN_HG00321 | 0 .03 RPM |
FIN_HG00328 | 0 .07 RPM |
FIN_HG00338 | 0 .02 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .04 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .06 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .03 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .02 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .03 RPM |
TSI_NA20765 | 0 .04 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .05 RPM |
YRI_NA19099 | 0 .05 RPM |
YRI_NA19114 | 0 .03 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .07 RPM |
YRI_NA19223 | 0 .08 RPM |