Parental gene:

PTPN2, ENSDNOG00000016588

Aliases:None
Description:protein tyrosine phosphatase, non-receptor type 2 [Source:HGNC Symbol;Acc:9650]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_5993:19640..70316(-)


>ENSDNOG00000016588
GAAATTCGAAATGAGTCCCATGACTATCCTCATAGAGTGGCCAAGTTTCCGGAAAACAGAAATCGAAACAGATACAGAGA
TGTAAGCCCATATGATCACAGCCGTGTCAAGCTGCAGAACACTGAAAATGATTATATTAACGCCAGCTTAGTCGACATAG
AAGAGGCGGAGAGGAGTTACGTCTTAACACAGGGTCCACTTCCTAATACGTGTTGTCATTTCTGGCTCATGGTTTGGCAG
CAAAAGACCAAAGCAGTTGTTATGCTGAACCGAGTTGTGGAGAAAGAATCAGTTAAATGTGCACAGTACTGGCCAACAAA
AGATGATCGAGAGATGCTGTTTAAAGAAACAGGATTCAGTGTGAAGCTCTTGTCAGAAGATGTGAAATCATATTATACAG
TACATCTACTACAATTAGAAAATATCAATAGTGGTGAAACCAGAACCATATCTCACTTTCATTATACTACCTGGCCAGAT
TTTGGAGTCCCTGAATCACCAGCTTCATTTCTCAATTTCTTATTTAAAGTGAGAGAATCTGGCTCCTTGAACCCTGAGCA
CGGGCCTGCAGTGATCCACTGTAGTGCAGGCATTGGGCGGTCTGGCACGTTTTCTTTAGTAGACACCTGTCTTGTTTTGA
TGGAAAAAGGAGATGATATTAATATTAAACAAGTTTTACTGAATATGAGAAAATACCGAATGGGACTTATTCAGACACCA
GATCAACTCAGATTCTCATATATGGCTATACTAGAAGGAGCGAAATTTATAAAGGGAGATTCAAATATACAGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTGTTCTGCGGAAACGTACTCGAGAAGACAGAAAAGCTAACACAGCTCAGAAGGTGCAGCAGATGAA
ACAGAGGCTTAATGAGACTGAACGAAAAAGAAAAAGGTGGTTATATTGGCAACCTATTCTCACTAAGATGGGGTTTGTGT
CGGTCATTTTGGTTGGCGCTTTTGTTGGCTGGACACTCTTTTTTCAGCAAAATGCCCTATAA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 17 .11 RPM
SRP012922_cerebellum 17 .87 RPM
SRP012922_heart 9 .05 RPM
SRP012922_kidney 14 .78 RPM
SRP012922_liver 9 .29 RPM
SRP012922_lung 20 .92 RPM
SRP012922_quadricep_muscle 7 .96 RPM
SRP012922_spleen 33 .88 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000000867 ortholog_one2one 1 retrogene
retro_chof_2231,
Callithrix jacchus ENSCJAG00000005102 ortholog_one2one 1 retrogene
retro_cjac_1577,
Erinaceus europaeus ENSEEUG00000005636 ortholog_one2one 1 retrogene
retro_eeur_370,
Echinops telfairi ENSETEG00000005577 ortholog_one2one 2 retrogenes
retro_etel_1743, retro_etel_1942,
Homo sapiens ENSG00000175354 ortholog_one2one 2 retrogenes
retro_hsap_1186, retro_hsap_480,
Gorilla gorilla ENSGGOG00000010259 ortholog_one2many 2 retrogenes
retro_ggor_453, retro_ggor_925,
Loxodonta africana ENSLAFG00000011818 ortholog_one2many 1 retrogene
retro_lafr_701,
Macropus eugenii ENSMEUG00000005156 ortholog_one2one 1 retrogene
retro_meug_653,
Monodelphis domestica ENSMODG00000021422 ortholog_one2one 1 retrogene
retro_mdom_1225,
Nomascus leucogenys ENSNLEG00000009074 ortholog_one2one 3 retrogenes
retro_nleu_2112, retro_nleu_351, retro_nleu_894,
Otolemur garnettii ENSOGAG00000028605 ortholog_one2one 1 retrogene
retro_ogar_3429,
Pongo abelii ENSPPYG00000008983 ortholog_one2one 3 retrogenes
retro_pabe_1077, retro_pabe_1144, retro_pabe_989,
Pan troglodytes ENSPTRG00000009884 ortholog_one2one 2 retrogenes
retro_ptro_361, retro_ptro_813,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_1466 72.17 52.67
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSDNOG00000016588 retrocopies