RetrogeneDB ID: | retro_hsap_1591 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 15:72333532..72333994(-) | ||
Located in intron of: | ENSG00000066933 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000260576 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF5A2 | ||
Ensembl ID: | ENSG00000163577 | ||
Aliases: | EIF5A2, EIF-5A2, eIF5AII | ||
Description: | eukaryotic translation initiation factor 5A2 [Source:HGNC Symbol;Acc:3301] |
Percent Identity: | 79.22 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MADEIDFTTGDAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYE |
M..EID.TTGDAGASST.PMQCS.LRK..F...KG.PCKIV.M.TSKTGK.GHAKVHLVGI..F.GKK.E | |
Retrocopy | MVYEIDLTTGDAGASSTHPMQCSTLRKSDFMMFKGQPCKIVKMLTSKTGKLGHAKVHLVGIAVFMGKKEE |
Parental | -DICPSTHNMDVPNIKRNDYQLICIQDGYLSLLTETGEVREDLKLPEGELGKEIEGKYNAGEDVQVSVMC |
.DICPS.HN.DVPNI.R.DYQLICIQD..LSL.TE..EV.EDLKLPE.ELGK.I.GKYNAGEDVQVSVMC | |
Retrocopy | EDICPSVHNVDVPNIQRHDYQLICIQDSCLSLPTEADEVPEDLKLPESELGK*IQGKYNAGEDVQVSVMC |
Parental | AMSEEYAVAIKPCK |
AMSEEYAVAIKPCK | |
Retrocopy | AMSEEYAVAIKPCK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 18 .19 RPM |
bodymap2_adrenal | 0 .00 RPM | 14 .59 RPM |
bodymap2_brain | 0 .00 RPM | 43 .36 RPM |
bodymap2_breast | 0 .00 RPM | 16 .75 RPM |
bodymap2_colon | 0 .14 RPM | 16 .69 RPM |
bodymap2_heart | 0 .06 RPM | 10 .19 RPM |
bodymap2_kidney | 0 .19 RPM | 12 .64 RPM |
bodymap2_liver | 0 .00 RPM | 5 .68 RPM |
bodymap2_lung | 0 .00 RPM | 10 .64 RPM |
bodymap2_lymph_node | 0 .00 RPM | 6 .96 RPM |
bodymap2_ovary | 0 .06 RPM | 22 .21 RPM |
bodymap2_prostate | 0 .00 RPM | 18 .12 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 2 .56 RPM |
bodymap2_testis | 0 .00 RPM | 26 .05 RPM |
bodymap2_thyroid | 0 .00 RPM | 8 .40 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 17 .03 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1070 |
Pongo abelii | retro_pabe_1308 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000005363 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000012594 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000014801 | 2 retrocopies | |
Homo sapiens | ENSG00000132507 | 3 retrocopies | |
Homo sapiens | ENSG00000163577 | 1 retrocopy |
retro_hsap_1591 ,
|
Loxodonta africana | ENSLAFG00000013225 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000007473 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000022880 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005292 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016657 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014294 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000015621 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000008130 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000000408 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .10 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .04 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .11 RPM |
CEU_NA12873 | 0 .03 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .08 RPM |
FIN_HG00321 | 0 .03 RPM |
FIN_HG00328 | 0 .05 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .03 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .03 RPM |
FIN_HG00378 | 0 .04 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .02 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .05 RPM |
GBR_HG00131 | 0 .06 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .02 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .03 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .05 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .05 RPM |
TSI_NA20756 | 0 .03 RPM |
TSI_NA20765 | 0 .04 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .09 RPM |
YRI_NA18870 | 0 .03 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .02 RPM |
YRI_NA19093 | 0 .03 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .02 RPM |
YRI_NA19213 | 0 .10 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .06 RPM |