RetrogeneDB ID: | retro_hsap_9 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 10:81272405..81272870(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000253626 | |
Aliases: | EIF5AL1, EIF5AP1, bA342M3.3 | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF5A | ||
Ensembl ID: | ENSG00000132507 | ||
Aliases: | EIF5A, EIF-5A, EIF5A1, eIF5AI | ||
Description: | eukaryotic translation initiation factor 5A [Source:HGNC Symbol;Acc:3300] |
Percent Identity: | 98.05 % |
Parental protein coverage: | 83.7 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYE |
MADDLDFETGDAGASATFPMQCSALRKNGFVVLKG.PCKIVEMS.SKTGKHGHAKVHLVGIDIFTGKKYE | |
Retrocopy | MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGWPCKIVEMSASKTGKHGHAKVHLVGIDIFTGKKYE |
Parental | DICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEEILITVLSA |
DICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEV.EDLRLPEGDLGKEIEQKYDCGEEILITVLSA | |
Retrocopy | DICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVPEDLRLPEGDLGKEIEQKYDCGEEILITVLSA |
Parental | MTEEAAVAIKAMAK |
MTEEAAVAIKAMAK | |
Retrocopy | MTEEAAVAIKAMAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .12 RPM | 201 .22 RPM |
bodymap2_adrenal | 0 .37 RPM | 249 .77 RPM |
bodymap2_brain | 0 .21 RPM | 73 .04 RPM |
bodymap2_breast | 0 .27 RPM | 161 .89 RPM |
bodymap2_colon | 0 .10 RPM | 133 .92 RPM |
bodymap2_heart | 0 .06 RPM | 69 .45 RPM |
bodymap2_kidney | 0 .10 RPM | 139 .49 RPM |
bodymap2_liver | 0 .02 RPM | 206 .78 RPM |
bodymap2_lung | 0 .18 RPM | 202 .00 RPM |
bodymap2_lymph_node | 0 .02 RPM | 102 .33 RPM |
bodymap2_ovary | 0 .21 RPM | 136 .21 RPM |
bodymap2_prostate | 0 .03 RPM | 116 .41 RPM |
bodymap2_skeletal_muscle | 0 .11 RPM | 234 .31 RPM |
bodymap2_testis | 0 .58 RPM | 161 .70 RPM |
bodymap2_thyroid | 0 .17 RPM | 158 .33 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 139 .51 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_7358 | 1078 libraries | 658 libraries | 92 libraries | 1 library | 0 libraries |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_504 |
Gorilla gorilla | retro_ggor_159 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000132507 | 3 retrocopies |
retro_hsap_1788, retro_hsap_2004, retro_hsap_9 ,
|
Homo sapiens | ENSG00000163577 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012032 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000012459 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006206 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000006652 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000014230 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000007907 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000008674 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000016478 | 3 retrocopies | |
Sus scrofa | ENSSSCG00000017939 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000009783 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .53 RPM |
CEU_NA11843 | 1 .08 RPM |
CEU_NA11930 | 1 .60 RPM |
CEU_NA12004 | 0 .61 RPM |
CEU_NA12400 | 0 .56 RPM |
CEU_NA12751 | 0 .44 RPM |
CEU_NA12760 | 0 .85 RPM |
CEU_NA12827 | 1 .23 RPM |
CEU_NA12872 | 0 .57 RPM |
CEU_NA12873 | 0 .83 RPM |
FIN_HG00183 | 1 .02 RPM |
FIN_HG00277 | 0 .67 RPM |
FIN_HG00315 | 0 .88 RPM |
FIN_HG00321 | 0 .70 RPM |
FIN_HG00328 | 0 .71 RPM |
FIN_HG00338 | 1 .00 RPM |
FIN_HG00349 | 1 .68 RPM |
FIN_HG00375 | 0 .42 RPM |
FIN_HG00377 | 0 .83 RPM |
FIN_HG00378 | 0 .66 RPM |
GBR_HG00099 | 0 .90 RPM |
GBR_HG00111 | 0 .73 RPM |
GBR_HG00114 | 0 .63 RPM |
GBR_HG00119 | 0 .67 RPM |
GBR_HG00131 | 0 .34 RPM |
GBR_HG00133 | 0 .68 RPM |
GBR_HG00134 | 0 .61 RPM |
GBR_HG00137 | 0 .99 RPM |
GBR_HG00142 | 0 .67 RPM |
GBR_HG00143 | 0 .64 RPM |
TSI_NA20512 | 0 .71 RPM |
TSI_NA20513 | 0 .82 RPM |
TSI_NA20518 | 1 .47 RPM |
TSI_NA20532 | 0 .61 RPM |
TSI_NA20538 | 1 .11 RPM |
TSI_NA20756 | 0 .87 RPM |
TSI_NA20765 | 0 .64 RPM |
TSI_NA20771 | 1 .42 RPM |
TSI_NA20786 | 0 .84 RPM |
TSI_NA20798 | 0 .97 RPM |
YRI_NA18870 | 1 .29 RPM |
YRI_NA18907 | 0 .66 RPM |
YRI_NA18916 | 0 .63 RPM |
YRI_NA19093 | 0 .57 RPM |
YRI_NA19099 | 1 .04 RPM |
YRI_NA19114 | 0 .81 RPM |
YRI_NA19118 | 0 .48 RPM |
YRI_NA19213 | 0 .57 RPM |
YRI_NA19214 | 0 .49 RPM |
YRI_NA19223 | 0 .78 RPM |