RetrogeneDB ID: | retro_hsap_1814 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 17:20805280..20806054(-) | ||
Located in intron of: | ENSG00000233098 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000265790 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNASEH1 | ||
Ensembl ID: | ENSG00000171865 | ||
Aliases: | RNASEH1, H1RNA, RNH1 | ||
Description: | ribonuclease H1 [Source:HGNC Symbol;Acc:18466] |
Percent Identity: | 85.23 % |
Parental protein coverage: | 91.26 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MSWLLFLA-HRVALAALPCRRGSRGFGMFYAVRRGRKTGVFLTWNECRAQVDRFPAARFKKFATEDEAWA |
MS.LLFLA..RVALAALPCR..S.GFGMFYAVRRG.KTGVFLT.NEC.AQVDRFPAARFKKFATEDE.W. | |
Retrocopy | MSRLLFLA<RRVALAALPCRC-SHGFGMFYAVRRGGKTGVFLTGNECKAQVDRFPAARFKKFATEDETWD |
Parental | FVRKSASPEVSEGHENQHGQESEAKASKRLREPLDGDGHESAEPYA-KHMKPSVEPAPPVSRDTFSYMGD |
FVRKSASPEVSEG.ENQHGQESE.KASKRLREPLDGDG.ESAEPYA.KHMKP.V.PAPPVSRDTFSYMGD | |
Retrocopy | FVRKSASPEVSEGQENQHGQESETKASKRLREPLDGDGDESAEPYA<KHMKPRVKPAPPVSRDTFSYMGD |
Parental | FVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLY |
FVVVY.DGCCSSNGRRRPRAGI.VYWGPG.PLNVGIRLPG.QTNQRAEIHAA.KAIEQAKTQNINKLVLY | |
Retrocopy | FVVVYADGCCSSNGRRRPRAGIRVYWGPGYPLNVGIRLPGWQTNQRAEIHAAYKAIEQAKTQNINKLVLY |
Parental | TDSMFTINGITNWVQGWKKNGWKTSAGK-EVINKEDFVALERLTQGMDIQWMHV |
TDSMFTING.T....G.K..G.....GK.EVINKEDFVALERLTQGMDIQW... | |
Retrocopy | TDSMFTINGVTGFKVGRKMDG-RQVQGK<EVINKEDFVALERLTQGMDIQWASI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .02 RPM | 22 .48 RPM |
bodymap2_adrenal | 0 .00 RPM | 21 .00 RPM |
bodymap2_brain | 0 .05 RPM | 18 .80 RPM |
bodymap2_breast | 0 .00 RPM | 16 .63 RPM |
bodymap2_colon | 0 .00 RPM | 10 .38 RPM |
bodymap2_heart | 0 .00 RPM | 13 .42 RPM |
bodymap2_kidney | 0 .00 RPM | 11 .83 RPM |
bodymap2_liver | 0 .00 RPM | 7 .98 RPM |
bodymap2_lung | 0 .00 RPM | 5 .78 RPM |
bodymap2_lymph_node | 0 .00 RPM | 12 .24 RPM |
bodymap2_ovary | 0 .00 RPM | 15 .25 RPM |
bodymap2_prostate | 0 .03 RPM | 9 .02 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 10 .91 RPM |
bodymap2_testis | 1 .13 RPM | 12 .73 RPM |
bodymap2_thyroid | 0 .00 RPM | 19 .43 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 10 .53 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000008547 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000035450 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000012674 | 1 retrocopy | |
Homo sapiens | ENSG00000171865 | 2 retrocopies |
retro_hsap_1814 , retro_hsap_300,
|
Macropus eugenii | ENSMEUG00000003610 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014475 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000014491 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015400 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000025873 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011614 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000002070 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000013051 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .03 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .03 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .03 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |