RetrogeneDB ID: | retro_hsap_300 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 1:210477029..210477882(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000233455 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNASEH1 | ||
Ensembl ID: | ENSG00000171865 | ||
Aliases: | RNASEH1, H1RNA, RNH1 | ||
Description: | ribonuclease H1 [Source:HGNC Symbol;Acc:18466] |
Percent Identity: | 72.82 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MSWLLFLAHRVALAALPCRRGSRGFGMFYAVRRGRKTGVFLTWNECRAQVDRFPAARFKKFATEDEAWAF |
M..LL.LAHRV.L.A..C.R......M.YAV.R...TGVFLTWNE.RA.VD.FPAARFKKFATE.EAWAF | |
Retrocopy | MCQLLSLAHRVTLIAVRCHRDCCSLRMVYAVGRACRTGVFLTWNEYRA*VDLFPAARFKKFATENEAWAF |
Parental | VRKSASPEVSEGHENQHGQESEAKASKRLREPLDGDGHESAEPYAKHMKPSVEPAPPVSRDTFSYM-GDF |
VRKSASPE.SEG..N.H.QES..KASK.L.EPL.GDG.ESAE..AK..K...EPAP.VSRD.F....G.. | |
Retrocopy | VRKSASPEGSEGQKNKHVQESQMKASKGLCEPLNGDGDESAESCAKPVKQIIEPAPRVSRDIFLHR>GFV |
Parental | VVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYT |
VV.YTDG.CSSNG.RR...G..VYWGPGHPLNVGIRLPG.QTNQRAE.HAAC..IEQAK..NINKLVLYT | |
Retrocopy | VV-YTDGYCSSNGWRRALVGTDVYWGPGHPLNVGIRLPG*QTNQRAENHAACNTIEQAKAENINKLVLYT |
Parental | DSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLARE |
DSMF.INGITNWVQG.KKN.WKTS.GK.V.NK.DFVALE.L.QGMDIQW..VPGH.G.IGNEEADRLAR. | |
Retrocopy | DSMFAINGITNWVQGRKKNRWKTSTGK*VMNKKDFVALEKLSQGMDIQWILVPGHPGCIGNEEADRLAR- |
Parental | GAKQSED |
GAK.SED | |
Retrocopy | GAKHSED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 22 .48 RPM |
bodymap2_adrenal | 0 .00 RPM | 21 .00 RPM |
bodymap2_brain | 0 .00 RPM | 18 .80 RPM |
bodymap2_breast | 0 .00 RPM | 16 .63 RPM |
bodymap2_colon | 0 .00 RPM | 10 .38 RPM |
bodymap2_heart | 0 .00 RPM | 13 .42 RPM |
bodymap2_kidney | 0 .00 RPM | 11 .83 RPM |
bodymap2_liver | 0 .00 RPM | 7 .98 RPM |
bodymap2_lung | 0 .05 RPM | 5 .78 RPM |
bodymap2_lymph_node | 0 .00 RPM | 12 .24 RPM |
bodymap2_ovary | 0 .00 RPM | 15 .25 RPM |
bodymap2_prostate | 0 .00 RPM | 9 .02 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 10 .91 RPM |
bodymap2_testis | 0 .08 RPM | 12 .73 RPM |
bodymap2_thyroid | 0 .06 RPM | 19 .43 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 10 .53 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_244 |
Gorilla gorilla | retro_ggor_336 |
Macaca mulatta | retro_mmul_544 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000008547 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000035450 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000012674 | 1 retrocopy | |
Homo sapiens | ENSG00000171865 | 2 retrocopies |
retro_hsap_1814, retro_hsap_300 ,
|
Macropus eugenii | ENSMEUG00000003610 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014475 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000014491 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015400 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000025873 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011614 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000002070 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000013051 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |