RetrogeneDB ID: | retro_hsap_2231 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 2:20440079..20440752(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000235411 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DRG1 | ||
Ensembl ID: | ENSG00000185721 | ||
Aliases: | DRG1, NEDD3 | ||
Description: | developmentally regulated GTP binding protein 1 [Source:HGNC Symbol;Acc:3029] |
Percent Identity: | 91.19 % |
Parental protein coverage: | 60.49 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | NKATAHHLGLLKARLAKLRRELITPKGGGGGGPGE-GFDVAKTGDARIGFVGFPSVGKSTLLSNLAGVYS |
NKATAHHLGLLKARLAKLRREL.TPKGGGGGG..E.GFDVA.TGDA.IGFVGFP.VGKSTLLSNLAGVYS | |
Retrocopy | NKATAHHLGLLKARLAKLRRELTTPKGGGGGGGAEEGFDVAETGDA*IGFVGFPFVGKSTLLSNLAGVYS |
Parental | EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGRQ-VIAVARTCNLILIVLDVLKPLGHK |
EVAAYEFTTL.TVPGVIRYKGAKIQLLDLPGIIEGA.DGKGRGR...IAVARTCNLILIVLDVLKPLGHK | |
Retrocopy | EVAAYEFTTLSTVPGVIRYKGAKIQLLDLPGIIEGARDGKGRGRR<IIAVARTCNLILIVLDVLKPLGHK |
Parental | KIIENELEGFGIRLNS--KPP-NIGFKKKDKGGINLTATCPQSELDAETVKSILAEYKIHNADVTLRSDA |
KIIENELE.FGI.LNS...PP.N.GFKKKDKGGI.LTATCPQSELDAETVKSILAEYKIHNADVTLRSDA | |
Retrocopy | KIIENELEVFGIHLNSNHRPP<NNGFKKKDKGGIHLTATCPQSELDAETVKSILAEYKIHNADVTLRSDA |
Parental | TADDLIDVVEGNRVYIP |
TADDLIDVVEGNRVYIP | |
Retrocopy | TADDLIDVVEGNRVYIP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .14 RPM | 47 .19 RPM |
bodymap2_adrenal | 0 .10 RPM | 34 .22 RPM |
bodymap2_brain | 0 .00 RPM | 37 .34 RPM |
bodymap2_breast | 0 .14 RPM | 53 .29 RPM |
bodymap2_colon | 0 .25 RPM | 50 .41 RPM |
bodymap2_heart | 0 .00 RPM | 42 .53 RPM |
bodymap2_kidney | 0 .00 RPM | 37 .84 RPM |
bodymap2_liver | 0 .00 RPM | 26 .49 RPM |
bodymap2_lung | 0 .00 RPM | 30 .78 RPM |
bodymap2_lymph_node | 0 .00 RPM | 29 .13 RPM |
bodymap2_ovary | 0 .12 RPM | 47 .75 RPM |
bodymap2_prostate | 0 .00 RPM | 53 .80 RPM |
bodymap2_skeletal_muscle | 0 .04 RPM | 116 .37 RPM |
bodymap2_testis | 0 .94 RPM | 222 .75 RPM |
bodymap2_thyroid | 0 .17 RPM | 58 .62 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 33 .57 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1578 |
Gorilla gorilla | retro_ggor_1665 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000007040 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000032601 | 6 retrocopies | |
Ciona intestinalis | ENSCING00000003305 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000011009 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000010791 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000006503 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000001312 | 1 retrocopy | |
Homo sapiens | ENSG00000185721 | 1 retrocopy |
retro_hsap_2231 ,
|
Gorilla gorilla | ENSGGOG00000011185 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007033 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019099 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000012810 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020457 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000027001 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000014272 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014187 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010160 | 3 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .10 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .04 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .03 RPM |
FIN_HG00321 | 0 .03 RPM |
FIN_HG00328 | 0 .02 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .06 RPM |
FIN_HG00375 | 0 .05 RPM |
FIN_HG00377 | 0 .03 RPM |
FIN_HG00378 | 0 .02 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .08 RPM |
GBR_HG00119 | 0 .05 RPM |
GBR_HG00131 | 0 .09 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .06 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .02 RPM |
TSI_NA20518 | 0 .03 RPM |
TSI_NA20532 | 0 .07 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .03 RPM |
TSI_NA20765 | 0 .02 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .03 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .10 RPM |
YRI_NA18907 | 0 .03 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .03 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .03 RPM |
YRI_NA19118 | 0 .04 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |