RetrogeneDB ID: | retro_tsyr_1918 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_6662:24002..24826(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DRG1 | ||
Ensembl ID: | ENSTSYG00000010160 | ||
Aliases: | None | ||
Description: | developmentally regulated GTP binding protein 1 [Source:HGNC Symbol;Acc:3029] |
Percent Identity: | 77.17 % |
Parental protein coverage: | 74.93 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | VGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAK-DGKGRGRQVIAV |
.GFPSV.KS.LLSNL.G..SE.A.YEF.TLTTVP.VIR.K.AKIQLL.LPGIIEG...D.KGRG..V.AV | |
Retrocopy | LGFPSVEKSSLLSNLVGELSEMATYEFPTLTTVPSVIRFKDAKIQLLYLPGIIEGTR<DRKGRGYHVTAV |
Parental | ARTCNLILIVLDVLKPLGHKKIIENELEGFGIRLNSKPPNIGFKKKDKGGINLTATCPQSELDAETVKSI |
A.TCNLILIVLDVLK..GHKKII.N.LE...IRLNSKPP.IGFKKK.KG.INLT..CPQSELDAETVKSI | |
Retrocopy | A*TCNLILIVLDVLKLFGHKKIIKNKLESCSIRLNSKPPDIGFKKKNKGRINLTVSCPQSELDAETVKSI |
Parental | LAEYKIHNADVTLRSDATADDLIDVVEGNRVYIPCIYVLNKIDQISIEELDIIYKVPHCVPISAHHRWNF |
LAEYKIHNA.V.L.S.ATADDLIDVVEGN.VYI.CIY.L.KIDQIS.EELDI.Y.V.HCVPISAHH.WNF | |
Retrocopy | LAEYKIHNAIVILCSNATADDLIDVVEGNKVYILCIYMLKKIDQISTEELDITY*VSHCVPISAHHNWNF |
Parental | DDLLEKIWDYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVK |
DDLLEKIWD.LKLVRIYTKPK.QL..YTSP.VLP..RT.VED.C.KI.K..IKEFK..L.W.LSVK | |
Retrocopy | DDLLEKIWDNLKLVRIYTKPKNQLSVYTSPGVLPSARTMVEDLCIKIYKKHIKEFKCSLIWVLSVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000007040 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000032601 | 6 retrocopies | |
Ciona intestinalis | ENSCING00000003305 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000011009 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000010791 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000006503 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000001312 | 1 retrocopy | |
Homo sapiens | ENSG00000185721 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000011185 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007033 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019099 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000012810 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020457 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000027001 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000014272 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014187 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010160 | 3 retrocopies |
retro_tsyr_1374, retro_tsyr_1918 , retro_tsyr_405,
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