RetrogeneDB ID: | retro_nleu_2627 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397383.1:4219341..4220006(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSNLEG00000002506 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DRG1 | ||
Ensembl ID: | ENSNLEG00000027001 | ||
Aliases: | None | ||
Description: | developmentally regulated GTP binding protein 1 [Source:HGNC Symbol;Acc:3029] |
Percent Identity: | 85.46 % |
Parental protein coverage: | 89.47 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | KLLDLPGIIEGAKDGKGRGRQVIAVARTCNLILIVLDVLKPLGHKKIIENELE--GFGIRLNSKPP-NIG |
.LLDLPGIIE.AKDGKGRG.QVIAV.R.CNLILIVLD.LKPLGHKKIIENELE..G.....N..PP.N.G | |
Retrocopy | QLLDLPGIIEDAKDGKGRGHQVIAVGRNCNLILIVLDILKPLGHKKIIENELEGSGIHLNSNHRPP<NTG |
Parental | FKKKDKGGI-NLTATCPQSELDAETVKSILAEYKIHNADVTLRSDATADDLIDVVEGNRVYIPCIYVLNK |
FKKKDKGGI..LTATCPQSELDAETVK.ILAEYKIHNA.VTLRS.A.ADDLIDVVEGNRVYIPCIYVLNK | |
Retrocopy | FKKKDKGGI<YLTATCPQSELDAETVKGILAEYKIHNANVTLRSNAAADDLIDVVEGNRVYIPCIYVLNK |
Parental | IDQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKG-QLPDYTSPVVLPYSRTTV |
IDQISIEELD.IYKVPHCVPI.AHH.WNFDDLLEKIW.YLKLVRIYTKPKG.QL..YTSPVVLPYSRTTV | |
Retrocopy | IDQISIEELDSIYKVPHCVPIAAHHHWNFDDLLEKIWYYLKLVRIYTKPKG<QLQGYTSPVVLPYSRTTV |
Parental | -EDFCMKIHKNLIKEFK |
..DFCMKIHKNLIK.FK | |
Retrocopy | <GDFCMKIHKNLIKQFK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000007040 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000032601 | 6 retrocopies | |
Ciona intestinalis | ENSCING00000003305 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000011009 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000010791 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000006503 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000001312 | 1 retrocopy | |
Homo sapiens | ENSG00000185721 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000011185 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007033 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019099 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000012810 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020457 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000027001 | 1 retrocopy |
retro_nleu_2627 ,
|
Pan troglodytes | ENSPTRG00000014272 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014187 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010160 | 3 retrocopies |