RetrogeneDB ID: | retro_tsyr_1374 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_41770:11810..12738(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DRG1 | ||
Ensembl ID: | ENSTSYG00000010160 | ||
Aliases: | None | ||
Description: | developmentally regulated GTP binding protein 1 [Source:HGNC Symbol;Acc:3029] |
Percent Identity: | 83.54 % |
Parental protein coverage: | 84.74 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | FDVAKTGDARIGF-VGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGA |
FDV.KTGDA.IG..VGFPSVGKS.LLSNLAGVYSE.AAYEFT.LTTVPGVI.YKGA..QLLDLPGI.EGA | |
Retrocopy | FDVVKTGDA*IGL<VGFPSVGKSKLLSNLAGVYSEAAAYEFTSLTTVPGVIIYKGANSQLLDLPGITEGA |
Parental | KDGKGRGRQVIAVARTCNLILIVLDVLKPLGHKKIIENELEGFGIRLNSKPP-NIGFKKKDKGGINLTAT |
KDGKGRGRQVIAVA.TCNL.LIVLDVLKP.G.KKIIENELE...I.LN.KPP.NIGFKKKDKGGINL.AT | |
Retrocopy | KDGKGRGRQVIAVA*TCNLFLIVLDVLKPSGYKKIIENELEASVIHLNRKPP<NIGFKKKDKGGINLIAT |
Parental | CPQSELDAETVKSILAEYKIHNADVTLRSDATADDLIDVVEGNRVYIPCIYVLNKIDQISIEELDIIYKV |
CPQSELDAETVKSI.AEYKIHNADVTL.SDATADD.IDVV..NRVYIPCIY.LNKIDQI.IEEL.IIYKV | |
Retrocopy | CPQSELDAETVKSIVAEYKIHNADVTLHSDATADDVIDVVDRNRVYIPCIYMLNKIDQICIEELGIIYKV |
Parental | PHCVPISAHHRWNFDDLLEKIWDYLKL-VRIYTKPKGQLPDYTSPVVLPYSRTT-VEDFCMKIHKNLIKE |
PH.VP.S.HHR.NFDD.LEKIWDYLKL.VRI.TKPK...PD..SPVVLPYSRTT..EDFCMKIHKNLIK. | |
Retrocopy | PHYVPVSVHHRCNFDDPLEKIWDYLKL<VRICTKPKDW*PDCSSPVVLPYSRTT<LEDFCMKIHKNLIKD |
Parental | FKYALVW-GLSVKHNPQKVGKDHTLEDEDVIQIVKK |
FKY.LVW.GLSVKH.PQK..KDHTLED..VIQIVKK | |
Retrocopy | FKYTLVW<GLSVKHSPQKFVKDHTLEDANVIQIVKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000007040 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000032601 | 6 retrocopies | |
Ciona intestinalis | ENSCING00000003305 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000011009 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000010791 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000006503 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000001312 | 1 retrocopy | |
Homo sapiens | ENSG00000185721 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000011185 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007033 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019099 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000012810 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020457 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000027001 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000014272 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014187 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010160 | 3 retrocopies |
retro_tsyr_1374 , retro_tsyr_1918, retro_tsyr_405,
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