RetrogeneDB ID: | retro_mluc_1447 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429840:2555161..2555706(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DRG1 | ||
Ensembl ID: | ENSMLUG00000007033 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.38 % |
Parental protein coverage: | 50.41 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | TGDARIGFV-GFPSVGKSTLLSNLAGVYSEVAA-YEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGK |
TGDARIGFV.GF.SVGKSTL.S.L.GVYS..AA.Y.FTTLTTV.G.....G.KIQLL.LP.I.E.A.DGK | |
Retrocopy | TGDARIGFV<GFSSVGKSTLASHLVGVYSDMAAIYDFTTLTTVSGS---SGTKIQLLNLPDISEDARDGK |
Parental | GRGRQVIAVARTCNLILIVLDVLKPLGHKKIIENELEGFGLRLNSKPPNIGFKKKDKGGINLTATCPQSE |
.RG.QVI.V..T.N.ILIV..VLK.LGHK..IENELE....RLNSKPPN.G.K.KDKGG.NL.ATCPQSE | |
Retrocopy | SRGYQVIVVT*TYNVILIVRNVLKILGHK-VIENELECLDTRLNSKPPNTGCK*KDKGGMNLMATCPQSE |
Parental | LDAETVKSILAEYKIHNADVTLRSDATADDLIDVVEGNRVYIPCIYV |
LDAETVKSIL.EY..H.A.VTL.SDA..D.LI...E.N.VY....Y. | |
Retrocopy | LDAETVKSILIEY*LHHAEVTLQSDAASDGLIEAMEENSVYPQDVYI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000007040 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000032601 | 6 retrocopies | |
Ciona intestinalis | ENSCING00000003305 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000011009 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000010791 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000006503 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000001312 | 1 retrocopy | |
Homo sapiens | ENSG00000185721 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000011185 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007033 | 1 retrocopy |
retro_mluc_1447 ,
|
Macaca mulatta | ENSMMUG00000019099 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000012810 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020457 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000027001 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000014272 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014187 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010160 | 3 retrocopies |