RetrogeneDB ID: | retro_mputfur_339 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL896904.1:14205400..14206183(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DRG1 | ||
Ensembl ID: | ENSMPUG00000012810 | ||
Aliases: | None | ||
Description: | developmentally regulated GTP binding protein 1 [Source:HGNC Symbol;Acc:3029] |
Percent Identity: | 66.42 % |
Parental protein coverage: | 72.21 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 6 |
Parental | GFVGFPSVGKSTLLSN-LAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIE-GAKDGKGRGRQV |
GFV.FPSV.KST.LS..LA.VY......EFTTL.TVPGVI.YKGAK.QLLDLP.I.E.G....K.....V | |
Retrocopy | GFVDFPSVEKSTRLSD<LAAVYFSMKP-EFTTLATVPGVITYKGAKTQLLDLPVIHE<GCQE*K-KVKEV |
Parental | IAVARTCNLILIVLDVLKPLGHKKIIENELEGFGIRLNSKPPNIGFKKK-DKGGINLTATCPQSELDAET |
I.VA..C.LI.I.LDVLKPLGH.KI.E..L..F.I.LNSKP.NIGFKK...K..I.LT.TCPQSELDA.. | |
Retrocopy | IVVAWVCDLIAIALDVLKPLGHEKITEYKLGRFRIHLNSKPLNIGFKKE<GKESIDLTVTCPQSELDAQI |
Parental | VKSILAEYKIHNADVTLR-SDATADDLIDVVEGNRVYIPCIYVLNKIDQISIEELDIIYKVPHCVPISAH |
V..I.AEYKI.NA.V.L..SDAT..D.ID.VEGNRV.I.CIYVLNKI.QISIEEL.IIYKVPH...ISA. | |
Retrocopy | VRNIPAEYKISNAGVALT<SDATVHDFIDMVEGNRVSILCIYVLNKIYQISIEELYIIYKVPHYAFISAY |
Parental | HRWNFDDLLEKIWDYLKLVRI-YTKPKGQLPDYTSPVVLPYSRTT-VEDFCMKIHKNLIKE |
H.WNF.DLLE.IW...KLVR...TKPK.QLPDYT.P.V.PY.R.T..EDF...IHKNLIKE | |
Retrocopy | HCWNFGDLLENIWYLEKLVRL<FTKPKAQLPDYTPPIVPPYPRIT<MEDFHTNIHKNLIKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000007040 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000032601 | 6 retrocopies | |
Ciona intestinalis | ENSCING00000003305 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000011009 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000010791 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000006503 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000001312 | 1 retrocopy | |
Homo sapiens | ENSG00000185721 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000011185 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007033 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019099 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000012810 | 1 retrocopy |
retro_mputfur_339 ,
|
Mus musculus | ENSMUSG00000020457 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000027001 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000014272 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014187 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010160 | 3 retrocopies |