RetrogeneDB ID: | retro_hsap_3080 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 4:113614603..113614948(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000248633 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | WRB | ||
Ensembl ID: | ENSG00000182093 | ||
Aliases: | WRB, CHD5 | ||
Description: | tryptophan rich basic protein [Source:HGNC Symbol;Acc:12790] |
Percent Identity: | 74.14 % |
Parental protein coverage: | 66.67 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSSAAADHWAWLLVLSFVFGCNVLRILLPSFSSFMSRVLQKDAEQESQMRAEIQDMKQELSTVNMMDEFA |
M..A.A.HWAWLLVL.F.FGC.VL.ILLPSFS.FMSRV..KDAEQESQ..AEIQDMKQELS.VNMMD.FA | |
Retrocopy | MGTAKANHWAWLLVLRFLFGCSVLQILLPSFS-FMSRVQRKDAEQESQTKAEIQDMKQELSAVNMMDKFA |
Parental | RYARLERKINKMTDKLKTHVKARTAQLAKIKWVISVAFYVLQAALM |
R.ARLERKINKM..KLKTHVK..TAQ....KWVISVAFY.L..... | |
Retrocopy | RSARLERKINKMMNKLKTHVKVQTAQSGMLKWVISVAFYKLPGTVI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .04 RPM | 14 .27 RPM |
bodymap2_adrenal | 0 .00 RPM | 22 .13 RPM |
bodymap2_brain | 0 .00 RPM | 87 .15 RPM |
bodymap2_breast | 0 .02 RPM | 21 .56 RPM |
bodymap2_colon | 0 .00 RPM | 32 .04 RPM |
bodymap2_heart | 0 .00 RPM | 16 .91 RPM |
bodymap2_kidney | 0 .00 RPM | 40 .31 RPM |
bodymap2_liver | 0 .00 RPM | 14 .28 RPM |
bodymap2_lung | 0 .00 RPM | 27 .53 RPM |
bodymap2_lymph_node | 0 .00 RPM | 20 .06 RPM |
bodymap2_ovary | 0 .00 RPM | 44 .65 RPM |
bodymap2_prostate | 0 .05 RPM | 32 .86 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 14 .59 RPM |
bodymap2_testis | 0 .00 RPM | 67 .85 RPM |
bodymap2_thyroid | 0 .08 RPM | 22 .77 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 22 .50 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2078 |
Pongo abelii | retro_pabe_2552 |
Macaca mulatta | retro_mmul_1966 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000005714 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000024987 | 1 retrocopy | |
Homo sapiens | ENSG00000182093 | 1 retrocopy |
retro_hsap_3080 ,
|
Gorilla gorilla | ENSGGOG00000013144 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000015808 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000020654 | 2 retrocopies | |
Mus musculus | ENSMUSG00000023147 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013146 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000026761 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000011427 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000013915 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000012736 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000015373 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .03 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .03 RPM |
FIN_HG00277 | 0 .04 RPM |
FIN_HG00315 | 0 .06 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .02 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .02 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .03 RPM |
TSI_NA20513 | 0 .02 RPM |
TSI_NA20518 | 0 .03 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .05 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .06 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .03 RPM |
YRI_NA18916 | 0 .04 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .02 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .02 RPM |
YRI_NA19223 | 0 .00 RPM |