RetrogeneDB ID:

retro_mmul_853

Retrocopy
location
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:11:30855657..30856005(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:WRB
Ensembl ID:ENSMMUG00000020654
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mmul_853
GAACTCTCCATGGTCAACATGATGGAGGAGTTTGTCAGCTATGCCATGCTAGAAAGAAAGATCAGCAAGATGACGGATAA
CCTCAAAGCCCACGTGAAAGCTCAGACAACTCAATTAGCCAAGATAAAATGGATGACAAGTGTCACTTTCTATGTATTGC
AGGTTGCCCTGATGATCTCACTCATTTGGAAGTATTATTCTGTCCCCGTGGCTGTTGTCCGGAGAAAATGGATAACCCCT
CCAGACCACCTGGTAGCCTTTCCTACTAGAATAGCAGGTGGTGTTGGAATTACCTGTTGGATTTTAGTCTGTAACAAAAT
TGTGGCTATTGTGCTTCATCCGTTCAGC

ORF - retro_mmul_853 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 82.76 %
Parental protein coverage: 66.67 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalELSTVNMMDEFARYARLERKINKMTDKLKTHVKARTAQLAKIKWVISVAFYVLQAALMISLIWKYYSVPV
ELS.VNMM.EF..YA.LERKI.KMTD.LK.HVKA.T.QLAKIKW..SV.FYVLQ.ALMISLIWKYYSVPV
RetrocopyELSMVNMMEEFVSYAMLERKISKMTDNLKAHVKAQTTQLAKIKWMTSVTFYVLQVALMISLIWKYYSVPV
ParentalAVVPSKWITPLDRLVAFPTRVAGGVGITCWILVCNKVVAIVLHPFS
AVV..KWITP.D.LVAFPTR.AGGVGITCWILVCNK.VAIVLHPFS
RetrocopyAVVRRKWITPPDHLVAFPTRIAGGVGITCWILVCNKIVAIVLHPFS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .00 RPM 33 .50 RPM
SRP007412_brain_prefrontal_cortex 0 .00 RPM 31 .97 RPM
SRP007412_cerebellum 0 .00 RPM 35 .00 RPM
SRP007412_heart 0 .00 RPM 12 .66 RPM
SRP007412_kidney 0 .12 RPM 20 .07 RPM
SRP007412_liver 0 .00 RPM 6 .93 RPM
SRP007412_testis 0 .00 RPM 18 .88 RPM
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_853 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_853 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_mmul_853 has 1 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Callithrix jacchus retro_cjac_3208

Parental genes homology:
Parental genes homology involve 13 parental genes, and 15 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000057142 retrocopies
Dasypus novemcinctus ENSDNOG000000249871 retrocopy
Homo sapiens ENSG000001820931 retrocopy
Gorilla gorilla ENSGGOG000000131441 retrocopy
Microcebus murinus ENSMICG000000158081 retrocopy
Macaca mulatta ENSMMUG00000020654 2 retrocopies
retro_mmul_1966, retro_mmul_853 ,
Mus musculus ENSMUSG000000231471 retrocopy
Nomascus leucogenys ENSNLEG000000131461 retrocopy
Otolemur garnettii ENSOGAG000000267611 retrocopy
Pongo abelii ENSPPYG000000114271 retrocopy
Pan troglodytes ENSPTRG000000139151 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000127361 retrocopy
Tursiops truncatus ENSTTRG000000153731 retrocopy



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