RetrogeneDB ID:

retro_ggor_2116

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:4:122137089..122137434(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:WRB
Ensembl ID:ENSGGOG00000013144
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_2116
ATGGGCACGGCTAAGGCTAACCACTGGGCGTGGCTGCTGGTGCTCAGATTCCTGTTTGGGTGCAGTGTCCTTCAGATCCT
ACTCCCGTCCTTCTCTTTTATGTCCAGGGTGCAGCGCAAGGATGCAGAACAGGAGTCGCAGATCAAAGCAGAGATCCAGG
ATATGAAGCAAGAGTTATCCGCGGTCAGTATGATGGACAAGTTTGCCAGATCTGCCAGGCTGGAAAGAAAGATCATCAAG
ATGCCGAATAAGCTCAAAACTCATGTGAAAGCACAGACAGCTCAATCAGGAATGCTAAAATGGGTTATAAGTGTTGCTTT
CTACAAATTGCCAGGTACCGTGATC

ORF - retro_ggor_2116 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 73.28 %
Parental protein coverage: 66.67 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMSSAAADHWAWLLVLSFVFGCNVLRILLPSFSSFMSRVLQKDAEQESQMRAEIQDMKQELSMVNMMDEFA
M..A.A.HWAWLLVL.F.FGC.VL.ILLPSFS.FMSRV..KDAEQESQ..AEIQDMKQELS.V.MMD.FA
RetrocopyMGTAKANHWAWLLVLRFLFGCSVLQILLPSFS-FMSRVQRKDAEQESQIKAEIQDMKQELSAVSMMDKFA
ParentalRYARLERKINKMTDKLKTHVKARTAQLAKIKWVISVAFYVLQAALM
R.ARLERKI.KM..KLKTHVKA.TAQ....KWVISVAFY.L.....
RetrocopyRSARLERKIIKMPNKLKTHVKAQTAQSGMLKWVISVAFYKLPGTVI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 65 .46 RPM
SRP007412_cerebellum 0 .00 RPM 46 .06 RPM
SRP007412_heart 0 .00 RPM 4 .75 RPM
SRP007412_kidney 0 .00 RPM 31 .48 RPM
SRP007412_liver 0 .00 RPM 13 .51 RPM
SRP007412_testis 0 .00 RPM 78 .84 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2116 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_2116 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 13 parental genes, and 15 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000057142 retrocopies
Dasypus novemcinctus ENSDNOG000000249871 retrocopy
Homo sapiens ENSG000001820931 retrocopy
Gorilla gorilla ENSGGOG00000013144 1 retrocopy
retro_ggor_2116 ,
Microcebus murinus ENSMICG000000158081 retrocopy
Macaca mulatta ENSMMUG000000206542 retrocopies
Mus musculus ENSMUSG000000231471 retrocopy
Nomascus leucogenys ENSNLEG000000131461 retrocopy
Otolemur garnettii ENSOGAG000000267611 retrocopy
Pongo abelii ENSPPYG000000114271 retrocopy
Pan troglodytes ENSPTRG000000139151 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000127361 retrocopy
Tursiops truncatus ENSTTRG000000153731 retrocopy



Copyright © RetrogeneDB 2014-2017