RetrogeneDB ID: | retro_ggor_2116 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 4:122137089..122137434(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | WRB | ||
Ensembl ID: | ENSGGOG00000013144 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.28 % |
Parental protein coverage: | 66.67 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSSAAADHWAWLLVLSFVFGCNVLRILLPSFSSFMSRVLQKDAEQESQMRAEIQDMKQELSMVNMMDEFA |
M..A.A.HWAWLLVL.F.FGC.VL.ILLPSFS.FMSRV..KDAEQESQ..AEIQDMKQELS.V.MMD.FA | |
Retrocopy | MGTAKANHWAWLLVLRFLFGCSVLQILLPSFS-FMSRVQRKDAEQESQIKAEIQDMKQELSAVSMMDKFA |
Parental | RYARLERKINKMTDKLKTHVKARTAQLAKIKWVISVAFYVLQAALM |
R.ARLERKI.KM..KLKTHVKA.TAQ....KWVISVAFY.L..... | |
Retrocopy | RSARLERKIIKMPNKLKTHVKAQTAQSGMLKWVISVAFYKLPGTVI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 65 .46 RPM |
SRP007412_cerebellum | 0 .00 RPM | 46 .06 RPM |
SRP007412_heart | 0 .00 RPM | 4 .75 RPM |
SRP007412_kidney | 0 .00 RPM | 31 .48 RPM |
SRP007412_liver | 0 .00 RPM | 13 .51 RPM |
SRP007412_testis | 0 .00 RPM | 78 .84 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000005714 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000024987 | 1 retrocopy | |
Homo sapiens | ENSG00000182093 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013144 | 1 retrocopy |
retro_ggor_2116 ,
|
Microcebus murinus | ENSMICG00000015808 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000020654 | 2 retrocopies | |
Mus musculus | ENSMUSG00000023147 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013146 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000026761 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000011427 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000013915 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000012736 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000015373 | 1 retrocopy |