RetrogeneDB ID: retro_ogar_2691

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873648.1:2924398..2924761(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: B4USY6_OTOGA
• Ensembl ID: ENSOGAG00000026761
• Aliases: None
• Description: Tryptophan-rich protein (Predicted) [Source:UniProtKB/TrEMBL;Acc:B4USY6]

Sequence

>retro_ogar_2691
TCCAGGTTGCTTCAGAAGGACAGAGAAAGTAAAATAGAAATCTAGAATATGAAGCAAGAGCTCTCCGCTGTCAATATGAT
GGATGCGCTCGCCAGATACACCAGGCGGGAAAGAAAGATCAACAGGATGACAGATAAGCTCATAACTCATGTGAAAGCAT
GGACAGCTCAATTAGCAAAGATAAAATGGGTTATAAATACTGCTTTCTATATATGGCAAGCTGCCCTGACGAGCTCACTC
ATGTGGAGGTATTTAGTCTGTCCCTGTGGCTGTTGGACCAGGTAAATAGATAACCCACCAGACCTCCCGGTAGCCTTTCC
TACTAGGGTAGTAAGTAGCTGGTGTTGGAACTACTTGTTGAAT

Alignment

ORF - retro_ogar_2691 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 66.15 %
• Parental protein coverage: 91.43 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  SRVLQKDAEQESQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKARTAQLAKIKWVIN
          SR.LQKD.E.......EI..MKQELS.VNMMD..ARY.R.ERKIN.MTDKL.THVKA.TAQLAKIKWVIN
Retrocopy SRLLQKDRES----KIEI*NMKQELSAVNMMDALARYTRRERKINRMTDKLITHVKAWTAQLAKIKWVIN

Parental  VAFYILQAALMISLIWKYY-SVPVAVVPSKWIT-PLDRLVAFPTRVAGGVGITCWILVCN
          .AFYI.QAAL..SL.W.Y..SVPVAV.P.K.IT.P.D..VAFPTRV...V...CW....N
Retrocopy TAFYIWQAALTSSLMWRYL>SVPVAVGPGK*IT<PPDLPVAFPTRV---VSSWCWNYLLN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2691 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 13 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000005714	2 retrocopies	retro_cjac_2153, retro_cjac_3208,
Dasypus novemcinctus	ENSDNOG00000024987	1 retrocopy	retro_dnov_1496,
Homo sapiens	ENSG00000182093	1 retrocopy	retro_hsap_3080,
Gorilla gorilla	ENSGGOG00000013144	1 retrocopy	retro_ggor_2116,
Microcebus murinus	ENSMICG00000015808	1 retrocopy	retro_mmur_1275,
Macaca mulatta	ENSMMUG00000020654	2 retrocopies	retro_mmul_1966, retro_mmul_853,
Mus musculus	ENSMUSG00000023147	1 retrocopy	retro_mmus_1452,
Nomascus leucogenys	ENSNLEG00000013146	1 retrocopy	retro_nleu_2014,
Otolemur garnettii	ENSOGAG00000026761	1 retrocopy	retro_ogar_2691 ,
Pongo abelii	ENSPPYG00000011427	1 retrocopy	retro_pabe_2552,
Pan troglodytes	ENSPTRG00000013915	1 retrocopy	retro_ptro_2078,
Ictidomys tridecemlineatus	ENSSTOG00000012736	1 retrocopy	retro_itri_1744,
Tursiops truncatus	ENSTTRG00000015373	1 retrocopy	retro_ttru_1711,