RetrogeneDB ID: | retro_hsap_3198 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 5:77518045..77518296(+) | ||
Located in intron of: | ENSG00000132842 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000249372 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP6V1G1 | ||
Ensembl ID: | ENSG00000136888 | ||
Aliases: | None | ||
Description: | ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 [Source:HGNC Symbol;Acc:864] |
Percent Identity: | 63.74 % |
Parental protein coverage: | 76.27 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | RAAEKVSEARKR-KNRRLKQAKEEAQAEIEQYRLQREKEFKAKEAAALGSRGSCSTEVEKETQEKMTILQ |
R....VSE.....KNRR.KQAK...Q.EIEQY.LQREKEFKAKEAAAL.S.GSCS..VE.ETQEK.TI.. | |
Retrocopy | RLLKRVSETCSE<KNRREKQAKAAVQGEIEQYCLQREKEFKAKEAAALRSQGSCSIKVE-ETQEKRTIWK |
Parental | TYFRQNRDEVLDNLLAFVCDI |
..FRQ.R.EVL....AF.C.I | |
Retrocopy | -QFRQKRGEVL----AFFCNI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 37 .31 RPM |
bodymap2_adrenal | 0 .00 RPM | 86 .85 RPM |
bodymap2_brain | 0 .00 RPM | 68 .30 RPM |
bodymap2_breast | 0 .00 RPM | 49 .71 RPM |
bodymap2_colon | 0 .00 RPM | 62 .88 RPM |
bodymap2_heart | 0 .00 RPM | 46 .39 RPM |
bodymap2_kidney | 0 .00 RPM | 120 .77 RPM |
bodymap2_liver | 0 .00 RPM | 64 .34 RPM |
bodymap2_lung | 0 .00 RPM | 96 .78 RPM |
bodymap2_lymph_node | 0 .00 RPM | 100 .49 RPM |
bodymap2_ovary | 0 .00 RPM | 82 .33 RPM |
bodymap2_prostate | 0 .00 RPM | 112 .46 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 54 .98 RPM |
bodymap2_testis | 0 .00 RPM | 121 .55 RPM |
bodymap2_thyroid | 0 .00 RPM | 105 .08 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 145 .49 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2248 |
Gorilla gorilla | retro_ggor_1331 |
Macaca mulatta | retro_mmul_2018 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020461 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000008083 | 15 retrocopies | |
Dipodomys ordii | ENSDORG00000014850 | 5 retrocopies | |
Echinops telfairi | ENSETEG00000008080 | 3 retrocopies | |
Homo sapiens | ENSG00000136888 | 3 retrocopies |
retro_hsap_3198 , retro_hsap_4049, retro_hsap_763,
|
Gorilla gorilla | ENSGGOG00000004011 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000013437 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000008657 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000004899 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000019574 | 1 retrocopy | |
Mus musculus | ENSMUSG00000039105 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000016833 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000021290 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000015857 | 5 retrocopies | |
Tupaia belangeri | ENSTBEG00000010985 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000011474 | 3 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .02 RPM |
CEU_NA11843 | 0 .03 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .02 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .03 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .04 RPM |