RetrogeneDB ID: | retro_hsap_4224 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 9:4781470..4782077(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000220105 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS5 | ||
Ensembl ID: | ENSG00000083845 | ||
Aliases: | RPS5, S5 | ||
Description: | ribosomal protein S5 [Source:HGNC Symbol;Acc:10426] |
Percent Identity: | 77.45 % |
Parental protein coverage: | 99.51 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYA-AKRFRKAQCPIV |
MT.WETAAP..AETP.I.LFG.WSTDDVQINDISL.DYIAVKEKYAKYL.HSAG.YA..K.F.K.QCPI. | |
Retrocopy | MTKWETAAPEMAETPNIQLFGRWSTDDVQINDISLKDYIAVKEKYAKYLLHSAGWYA>SKHFHKTQCPIL |
Parental | ERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAV |
E.LTNSM.MHG.NNGKK.MT..IVKHAFEIIHLL..EN.L.VLVNAIINSGP.EDST.IG.A.T.R.QAV | |
Retrocopy | EHLTNSMKMHGHNNGKKPMTMHIVKHAFEIIHLLMNENTLRVLVNAIINSGPWEDSTCIG*AKTMR*QAV |
Parental | DVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSN |
DV.PL...NQAIWLLC.G..EA.F.NIKTIAECL.DELINA..GSSNSY.I.KKDELE.VAKSN | |
Retrocopy | DVYPLHGMNQAIWLLCRGTCEASFQNIKTIAECLEDELINATRGSSNSYVI-KKDELEHVAKSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 249 .17 RPM |
bodymap2_adrenal | 0 .00 RPM | 279 .29 RPM |
bodymap2_brain | 0 .00 RPM | 59 .63 RPM |
bodymap2_breast | 0 .00 RPM | 186 .71 RPM |
bodymap2_colon | 0 .00 RPM | 374 .15 RPM |
bodymap2_heart | 0 .00 RPM | 83 .35 RPM |
bodymap2_kidney | 0 .00 RPM | 138 .43 RPM |
bodymap2_liver | 0 .00 RPM | 138 .78 RPM |
bodymap2_lung | 0 .00 RPM | 323 .07 RPM |
bodymap2_lymph_node | 0 .00 RPM | 384 .86 RPM |
bodymap2_ovary | 0 .00 RPM | 416 .21 RPM |
bodymap2_prostate | 0 .00 RPM | 457 .87 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 239 .88 RPM |
bodymap2_testis | 0 .02 RPM | 195 .62 RPM |
bodymap2_thyroid | 0 .00 RPM | 197 .43 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 395 .35 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_2828 |
Pongo abelii | retro_pabe_3413 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000002366 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000000304 | 6 retrocopies | |
Echinops telfairi | ENSETEG00000013543 | 1 retrocopy | |
Homo sapiens | ENSG00000083845 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000004258 | 4 retrocopies | |
Macropus eugenii | ENSMEUG00000015400 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000012641 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008729 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000008308 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000011921 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013088 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000011034 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000010500 | 7 retrocopies | |
Pan troglodytes | ENSPTRG00000011591 | 6 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000005935 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016955 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000000076 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000001991 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .04 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .03 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .02 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .03 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .03 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .03 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .02 RPM |