RetrogeneDB ID: | retro_etel_912 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_183811:328..774(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000016870 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS5 | ||
Ensembl ID: | ENSETEG00000013543 | ||
Aliases: | None | ||
Description: | ribosomal protein S5 [Source:HGNC Symbol;Acc:10426] |
Percent Identity: | 84. % |
Parental protein coverage: | 72.91 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKY-AYLPHSAGRYAAKRFRKAQCPIVE |
MTEWETAAPAVA.TPDIKLFG.WST.DVQI.DISLQD.IAVKEKY..YLPHSAG.Y.AK.F.KAQCP..E | |
Retrocopy | MTEWETAAPAVADTPDIKLFGEWSTEDVQIDDISLQDCIAVKEKYDKYLPHSAGCYSAKHFCKAQCPTME |
Parental | RLTNSMMMHGRNNGKKLMTVRI-VKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAV |
.LTNSM.MHG..NG.KLMTVR..VKHAFEIIHLLTGENPLQV.VNAI.NSGPREDSTRIGRAGTVRRQAV | |
Retrocopy | HLTNSMVMHGSSNGQKLMTVRL<VKHAFEIIHLLTGENPLQVPVNAIVNSGPREDSTRIGRAGTVRRQAV |
Parental | DVSPLRRVNQ |
DV.PLR.VNQ | |
Retrocopy | DVFPLRHVNQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000002366 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000000304 | 6 retrocopies | |
Echinops telfairi | ENSETEG00000013543 | 1 retrocopy |
retro_etel_912 ,
|
Homo sapiens | ENSG00000083845 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000004258 | 4 retrocopies | |
Macropus eugenii | ENSMEUG00000015400 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000012641 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008729 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000008308 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000011921 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013088 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000011034 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000010500 | 7 retrocopies | |
Pan troglodytes | ENSPTRG00000011591 | 6 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000005935 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016955 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000000076 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000001991 | 1 retrocopy |