RetrogeneDB ID: | retro_ggor_2942 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | X:107252053..107252385(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS5 | ||
Ensembl ID: | ENSGGOG00000004258 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.8 % |
Parental protein coverage: | 54.9 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | IVKHAFEIIHLLTGENPLQVLVNAIINSGPR-EDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGARE |
.VKHAF.IIHLLTG.NPLQVLVNAII..GP..EDST.I..A.TVR.Q.VD.SPL..VNQAIWLL.TG..E | |
Retrocopy | LVKHAFKIIHLLTGKNPLQVLVNAIIKCGPG<EDSTYIEQAETVRQQDVDMSPLYHVNQAIWLLYTGTSE |
Parental | AAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSN |
AAF.NIKTI.E.LAD.LI..AK.SSN.YAI..K..LE..AKSN | |
Retrocopy | AAFQNIKTITEYLADKLISIAKNSSNYYAI-EKNNLELMAKSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 93 .89 RPM |
SRP007412_cerebellum | 0 .00 RPM | 103 .70 RPM |
SRP007412_heart | 0 .00 RPM | 97 .75 RPM |
SRP007412_kidney | 0 .00 RPM | 190 .54 RPM |
SRP007412_liver | 0 .00 RPM | 313 .82 RPM |
SRP007412_testis | 0 .00 RPM | 103 .81 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_3152 |
Pongo abelii | retro_pabe_3683 |
Macaca mulatta | retro_mmul_2525 |
Callithrix jacchus | retro_cjac_4105 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000002366 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000000304 | 6 retrocopies | |
Echinops telfairi | ENSETEG00000013543 | 1 retrocopy | |
Homo sapiens | ENSG00000083845 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000004258 | 4 retrocopies | |
Macropus eugenii | ENSMEUG00000015400 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000012641 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008729 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000008308 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000011921 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013088 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000011034 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000010500 | 7 retrocopies | |
Pan troglodytes | ENSPTRG00000011591 | 6 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000005935 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016955 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000000076 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000001991 | 1 retrocopy |