RetrogeneDB ID: | retro_ptro_1469 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 21:19589847..19590457(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS5 | ||
Ensembl ID: | ENSPTRG00000011591 | ||
Aliases: | None | ||
Description: | ribosomal protein S5 [Source:HGNC Symbol;Acc:10426] |
Percent Identity: | 81.86 % |
Parental protein coverage: | 99.51 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MTEWETAAPAVAETP-DIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIV |
MTEWETAAPAVAETP.DIKL.GKWSTDD.QIN.ISLQDYIAVKEKYAKYLPHSAG.YAAK.FRKAQCPIV | |
Retrocopy | MTEWETAAPAVAETP>DIKLSGKWSTDDMQINGISLQDYIAVKEKYAKYLPHSAGWYAAKCFRKAQCPIV |
Parental | ERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAV |
E.LTNSMMMH..NN...LM...I.K.AF..IHLLTG.NPLQVLVNAIINSGP.EDST.IGRAGTVR.QAV | |
Retrocopy | EPLTNSMMMHSCNNSNNLMIMCIIKYAFDFIHLLTGKNPLQVLVNAIINSGPWEDSTCIGRAGTVRQQAV |
Parental | DVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSN |
D.SPL..VNQ..WLLCTG.REAAF.NIKTIAECLADELINA.K.SS.SYAI.KKDELE...KSN | |
Retrocopy | DMSPLHCVNQVVWLLCTGTREAAFWNIKTIAECLADELINATKASSSSYAINKKDELECGDKSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 140 .24 RPM |
SRP007412_cerebellum | 0 .07 RPM | 130 .70 RPM |
SRP007412_heart | 0 .03 RPM | 66 .74 RPM |
SRP007412_kidney | 0 .08 RPM | 286 .75 RPM |
SRP007412_liver | 0 .03 RPM | 233 .10 RPM |
SRP007412_testis | 0 .21 RPM | 37 .83 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2524 |
Pongo abelii | retro_pabe_1857 |
Callithrix jacchus | retro_cjac_2049 |