RetrogeneDB ID: | retro_hsap_979 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 12:24736119..24737252(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000256852 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KNOP1 | ||
Ensembl ID: | ENSG00000103550 | ||
Aliases: | None | ||
Description: | lysine-rich nucleolar protein 1 [Source:HGNC Symbol;Acc:34404] |
Percent Identity: | 83.42 % |
Parental protein coverage: | 83.62 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | KVDLG--LPEKKKKKKVVKEPETRYSVLNNDDYFADVSPLRATSPSKSVAHGQAPEMPLVKKKKKKKKGV |
KVDLG...PEKKKKKKVVKEP.T.YS.LNNDDYFA.VSP..AT.PSKSV.HGQAPEMPLVKKKKK.K.GV | |
Retrocopy | KVDLGPGIPEKKKKKKVVKEPGTQYSILNNDDYFAHVSPIKATAPSKSVVHGQAPEMPLVKKKKKEK-GV |
Parental | STLCEEHVEPETTLPARRTEKSPSLRKQVFGHLEFLSGEKKNKKSPLAMSHASGVKTSPDPRQGEEETRV |
STLCE.HVEPETTL.ARRTEKS.S.R.QV.GHLEFLSG.KK..KS.LA.SHASGVK.SPDPRQGEEETRV | |
Retrocopy | STLCEGHVEPETTLRARRTEKSSSPRNQVLGHLEFLSGQKK-RKSSLAISHASGVKISPDPRQGEEETRV |
Parental | GKKLKKHKKEKKGAQDPTAFSVQDPWFCEAREARDVGDTCSVGKKDEEQAALGQKRKRKSPREHNGKVKK |
GKKLKK.KKEKKGAQDPTAFSVQDPWFC...E..D..DTCSVGK..EEQ.ALGQKRK.KSPREH.GK.KK | |
Retrocopy | GKKLKKLKKEKKGAQDPTAFSVQDPWFC---EVGDAVDTCSVGKEGEEQVALGQKRKHKSPREHGGKAKK |
Parental | KKK-IHQEGDALPGHSKPSRSMESSPRKGSKKKPVKVEAPEYIPISDDPKASAKKKMKSKKKVEQPVIEE |
.....HQEGDALP.HSKPSRSMES.PRK.SKKKPVKVEAPEYIPI.D.PK..AKKKMKSKKKV.QPVIEE | |
Retrocopy | XXX<XHQEGDALPSHSKPSRSMESCPRKRSKKKPVKVEAPEYIPIGDGPKTPAKKKMKSKKKVKQPVIEE |
Parental | PALKRKKKKKRKESGVAGDPWKEETDTDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRESGKTEASETRK |
PAL.R.KKKKRKESGVAGDP.KEETDTDLEVVLEKKGNMD.AHIDQ..RKALQEE.DR.SGKTEASETRK | |
Retrocopy | PALQR-KKKKRKESGVAGDP*KEETDTDLEVVLEKKGNMD*AHIDQ-GRKALQEETDRQSGKTEASETRK |
Parental | WTGTQFGQWDTAGFENEDQKLKFLRLMGGFKNLSPS |
WTG.QFGQWDTAGFENE.QKLKFL.L.GGFKNLSPS | |
Retrocopy | WTGSQFGQWDTAGFENEEQKLKFLKLTGGFKNLSPS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 4 .77 RPM |
bodymap2_adrenal | 0 .00 RPM | 8 .43 RPM |
bodymap2_brain | 0 .00 RPM | 7 .81 RPM |
bodymap2_breast | 0 .00 RPM | 6 .17 RPM |
bodymap2_colon | 0 .00 RPM | 2 .88 RPM |
bodymap2_heart | 0 .00 RPM | 2 .71 RPM |
bodymap2_kidney | 0 .00 RPM | 5 .71 RPM |
bodymap2_liver | 0 .00 RPM | 3 .67 RPM |
bodymap2_lung | 0 .00 RPM | 1 .79 RPM |
bodymap2_lymph_node | 0 .00 RPM | 3 .65 RPM |
bodymap2_ovary | 0 .00 RPM | 8 .66 RPM |
bodymap2_prostate | 0 .00 RPM | 5 .54 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 2 .29 RPM |
bodymap2_testis | 0 .17 RPM | 7 .15 RPM |
bodymap2_thyroid | 0 .00 RPM | 7 .85 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 4 .11 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_767 |
Pongo abelii | retro_pabe_828 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000018032 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000009625 | 1 retrocopy | |
Homo sapiens | ENSG00000103550 | 3 retrocopies |
retro_hsap_3487, retro_hsap_4007, retro_hsap_979 ,
|
Gorilla gorilla | ENSGGOG00000005673 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002707 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000012496 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000010065 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000007151 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000007836 | 3 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |