Parental gene: | KNOP1, ENSCAFG00000018032 |
| Aliases: | None |
| Description: | lysine-rich nucleolar protein 1 [Source:HGNC Symbol;Acc:34404] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 6:25567851..25580283(+) |
>ENSCAFG00000018032
ATGATCACCAAAACCCACAAAGGAGACCTGGGCCTTGGGCTCCCAGAGAAAAAGAAGAAAAAGAAGAAGGTGGTCAAAGA
ACCAGAGACTCAATACTCAGTTTTAAACAGTGATGCTTATTTCAGTGAGATCTGTTCCACAAGAGCCACATCCCCTTCGA
AGAGTGTGGTCCTAGAGCAGGCATCTGAGATGCCTCTAATGAAGAAAAAGAAGAAAAAGAAGGGCCACAGCACCCTCTGT
GAGGAGTGCCTAGAACCTGAGACTGTGTTACGTGCTGGATGGACAGGGAAGTTGTCCAGCTCTAGGAAGCAGGCTCTTGG
TTCATCTGAATTTCAAGGTGGGGAGAAGAAAAAGAAGAGAAAGTCCTTACGGCCTCTGGCCATGTCCCCTGCCTCAAGAG
TGAAGATCTCCCCAGACCCCAAAGAGGATGAGGAGGTGACCAGAGTTGGCAAGAAACCCAAAAAGCACAAGAAGGAGAAA
AAGACCCAGGAGGCTACAGCCTCCTCAGCCAAGGACCCTTGGTTCTATGAGTCTGGGGATGCTCTATACACTTGTTCAGT
GGGGAAGGATGGCGAGGAGCAGGCAACCTCAGGGCAGAAACGAAAGCAGGGGAGCCCCAGAGAATGCAATGTGAAGATGA
AGAAGAAAAAGAAAATCCACCAGAAGGGAGATACTTCTCTAGGGCACCTTGAGTGCTCCAAGTCTGTAGAGAGAAGCCCT
AGGAAAGGAAGTAAGAAGCTAGTCAAAATTGAGGCTCCAGAATATATCCCAATAGGACATAACCCCAAAACCCCTGCAAA
GAAGAAAATGAAGTCCAAGAAAAAGACAGAGCAGCCAGGGATTGAGGAACCAGCTTTGAAGAGGAATAAAAAGAAGGGGA
AAGAGAGCAGAGTAGCAGGAGAATCTTGGGAAGAGGAGCCTGACACAGACTTAGAGGTGGTGTTGGAAAAGAAAGGCAAC
ATGGATGAGGCGCACATAGACCAGGTGAGGCGAAAGGCCTTGCAAGAAGAGATCGATCGTGAGTCAGGCAAAACAGAAGT
TTCTGAACCAAAGAAGTGGACAGGAACTCAGTTTGGCCAGTGGGATACTGCTGGTTTTGAAAACGAGGAACAGAAATTGA
AATTTCTCAAACTTATGGGTGGCTTTAAAAACATGTCCCCTTCATTCAGCCGCCCCTCTAACACAATTGGAAGGCCCAAC
ATGGCTCTCAACAAGAAGGCAGCCGACGCCCTGCAGCAGAACCTGCAGCAGGACTATGACCGGGCCATGAGCTGGAAGTA
CAAGCGTGGTGCTGGCCTCGGCTTCTCCTCTGCTCCAGACAAAATCTTTTATATTGACAGGAATGCTTCCAAGTCCATCA
AGTTTGAAGATTAA
ATGATCACCAAAACCCACAAAGGAGACCTGGGCCTTGGGCTCCCAGAGAAAAAGAAGAAAAAGAAGAAGGTGGTCAAAGA
ACCAGAGACTCAATACTCAGTTTTAAACAGTGATGCTTATTTCAGTGAGATCTGTTCCACAAGAGCCACATCCCCTTCGA
AGAGTGTGGTCCTAGAGCAGGCATCTGAGATGCCTCTAATGAAGAAAAAGAAGAAAAAGAAGGGCCACAGCACCCTCTGT
GAGGAGTGCCTAGAACCTGAGACTGTGTTACGTGCTGGATGGACAGGGAAGTTGTCCAGCTCTAGGAAGCAGGCTCTTGG
TTCATCTGAATTTCAAGGTGGGGAGAAGAAAAAGAAGAGAAAGTCCTTACGGCCTCTGGCCATGTCCCCTGCCTCAAGAG
TGAAGATCTCCCCAGACCCCAAAGAGGATGAGGAGGTGACCAGAGTTGGCAAGAAACCCAAAAAGCACAAGAAGGAGAAA
AAGACCCAGGAGGCTACAGCCTCCTCAGCCAAGGACCCTTGGTTCTATGAGTCTGGGGATGCTCTATACACTTGTTCAGT
GGGGAAGGATGGCGAGGAGCAGGCAACCTCAGGGCAGAAACGAAAGCAGGGGAGCCCCAGAGAATGCAATGTGAAGATGA
AGAAGAAAAAGAAAATCCACCAGAAGGGAGATACTTCTCTAGGGCACCTTGAGTGCTCCAAGTCTGTAGAGAGAAGCCCT
AGGAAAGGAAGTAAGAAGCTAGTCAAAATTGAGGCTCCAGAATATATCCCAATAGGACATAACCCCAAAACCCCTGCAAA
GAAGAAAATGAAGTCCAAGAAAAAGACAGAGCAGCCAGGGATTGAGGAACCAGCTTTGAAGAGGAATAAAAAGAAGGGGA
AAGAGAGCAGAGTAGCAGGAGAATCTTGGGAAGAGGAGCCTGACACAGACTTAGAGGTGGTGTTGGAAAAGAAAGGCAAC
ATGGATGAGGCGCACATAGACCAGGTGAGGCGAAAGGCCTTGCAAGAAGAGATCGATCGTGAGTCAGGCAAAACAGAAGT
TTCTGAACCAAAGAAGTGGACAGGAACTCAGTTTGGCCAGTGGGATACTGCTGGTTTTGAAAACGAGGAACAGAAATTGA
AATTTCTCAAACTTATGGGTGGCTTTAAAAACATGTCCCCTTCATTCAGCCGCCCCTCTAACACAATTGGAAGGCCCAAC
ATGGCTCTCAACAAGAAGGCAGCCGACGCCCTGCAGCAGAACCTGCAGCAGGACTATGACCGGGCCATGAGCTGGAAGTA
CAAGCGTGGTGCTGGCCTCGGCTTCTCCTCTGCTCCAGACAAAATCTTTTATATTGACAGGAATGCTTCCAAGTCCATCA
AGTTTGAAGATTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 10 .48 RPM |
| SRP017611_kidney | 14 .33 RPM |
| SRP017611_liver | 9 .06 RPM |
| SRP012049_cerebellum | 23 .48 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000009625 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000103550 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000005673 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000002707 | ortholog_one2many | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000012496 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000010065 | ortholog_one2many | 4 retrogenes | |
| Pongo abelii | ENSPPYG00000007151 | ortholog_one2one | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000007836 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_1557 | 88.51 | 63.89 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_1763 | 91.92 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000018032 retrocopies