Parental gene: | KNOP1, ENSPTRG00000007836 |
| Aliases: | None |
| Description: | lysine-rich nucleolar protein 1 [Source:HGNC Symbol;Acc:34404] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 16:19577808..19587575(-) |
>ENSPTRG00000007836
ATGATCACCAAGACACACAAAGTAGACCCTGGGCTCCCAGAGAAGAAAAAGAAGAAGAAAGTGGTCAAAGAACCAGAGAC
TCGATACTCAGTTTTAAACAATGATGATTACTTCGCTGATGTTTCTCCTTTAAGAGCCACATCCCCCTCTAAGAGTGTGG
CCCATGGGCAGGCACCTGAGATGCCTCTAGTGAAGAAAAAGAAGAAGAAAAAGAAGGGTGTCAGCACCCTTTGCGAGGAG
CATGTAGAACCTGAGACCACGCTGCCTGCCAGACGGACAGAGAAGTCACCCAGCCTCAGGAAGCAGGTGCTTGGCCACTT
GGAGTTCCTCAGTGGGGAAAAGAAAAATAAGAAGTCACCTCTAGCCATGTCCCATGCCTCTGGGGTGAAAACCTCCCCAG
ACCCTAGACAGGGTGAGGAGGAAACCAGAGTTGGCAAGAAGCTCAAAAAACACAAGAAGGAAAAAAAGGGGGCCCAGGAC
CCCACAGCCTTCTCAGTCCAGGACCCTTGGTTCTGTGAGACCAGGGAGGCCAGGGATGTTGGGGACACTTGCTCAGTGGG
GAAGAAGGATGAGGAACAGGCAGCCTTGGGGCAGAAACGGAAGCGGAAGAGCCCCAGAGAACACAATGGGAAGATGAAGA
AAAAAAAAAAAATCCACCAGGAGGGAGACGCCCTCCCAGGCCACTCCAAGCCCTCCAGGTCCATGGAGAGCAGCCCTAGG
AAGGGAAGTAAAAAGAAGCCAGTCAAAGTTGAGGCTCCGAAATACATCTCTATATGTGATGACCCTAAGCTCTCCGCAAA
GAAAAAGATGAAGTCCAAAAAGAATGTAGAGCAGCCAGTCATCGAGGAGCCAGCTCTGAAAGGAAGAAAAGAAAAGGAAG
AGAGTGGGGTAGCAGACTCTTGGAAGGAAACAGACACAGACTTAGAGGTGGTGTTGGAAAAAAAAGGCAACATGGATGAG
GCGCACATAGACCAGGTGAGGCGAAAGGCCCAAGAAGAGATCGATCGCGAATCAGGCAAAACGGAAGCTTCTGAAACCAG
GAAGTGGACGGGAACCCAGTTTGGCCAGTGGGATACTGCTGGTTTTGAGAACGAGGACCAGAAACTGAAATTTCTCAGAC
TTATGGGTGGCTTCAAAAACCTGTCCCCTTCGTTCAGCCGCCCCGCCAGCACGATTGCAAGGCCCAACATGGCCCTCAGC
AAGAGGGCGGCTGACAGCCTGCAGCAGAATCTGCAGCGGGACTACGACCGGGCCATGAGATGGAAGTACAGCCGGGGAGC
TGGCCTCGGCTTCTCCACCGCCCCCAACAAGATCTTTTACATTGACAGGAACGCTTCCAAGTCAGTCAAGCTGGAAGATT
AA
ATGATCACCAAGACACACAAAGTAGACCCTGGGCTCCCAGAGAAGAAAAAGAAGAAGAAAGTGGTCAAAGAACCAGAGAC
TCGATACTCAGTTTTAAACAATGATGATTACTTCGCTGATGTTTCTCCTTTAAGAGCCACATCCCCCTCTAAGAGTGTGG
CCCATGGGCAGGCACCTGAGATGCCTCTAGTGAAGAAAAAGAAGAAGAAAAAGAAGGGTGTCAGCACCCTTTGCGAGGAG
CATGTAGAACCTGAGACCACGCTGCCTGCCAGACGGACAGAGAAGTCACCCAGCCTCAGGAAGCAGGTGCTTGGCCACTT
GGAGTTCCTCAGTGGGGAAAAGAAAAATAAGAAGTCACCTCTAGCCATGTCCCATGCCTCTGGGGTGAAAACCTCCCCAG
ACCCTAGACAGGGTGAGGAGGAAACCAGAGTTGGCAAGAAGCTCAAAAAACACAAGAAGGAAAAAAAGGGGGCCCAGGAC
CCCACAGCCTTCTCAGTCCAGGACCCTTGGTTCTGTGAGACCAGGGAGGCCAGGGATGTTGGGGACACTTGCTCAGTGGG
GAAGAAGGATGAGGAACAGGCAGCCTTGGGGCAGAAACGGAAGCGGAAGAGCCCCAGAGAACACAATGGGAAGATGAAGA
AAAAAAAAAAAATCCACCAGGAGGGAGACGCCCTCCCAGGCCACTCCAAGCCCTCCAGGTCCATGGAGAGCAGCCCTAGG
AAGGGAAGTAAAAAGAAGCCAGTCAAAGTTGAGGCTCCGAAATACATCTCTATATGTGATGACCCTAAGCTCTCCGCAAA
GAAAAAGATGAAGTCCAAAAAGAATGTAGAGCAGCCAGTCATCGAGGAGCCAGCTCTGAAAGGAAGAAAAGAAAAGGAAG
AGAGTGGGGTAGCAGACTCTTGGAAGGAAACAGACACAGACTTAGAGGTGGTGTTGGAAAAAAAAGGCAACATGGATGAG
GCGCACATAGACCAGGTGAGGCGAAAGGCCCAAGAAGAGATCGATCGCGAATCAGGCAAAACGGAAGCTTCTGAAACCAG
GAAGTGGACGGGAACCCAGTTTGGCCAGTGGGATACTGCTGGTTTTGAGAACGAGGACCAGAAACTGAAATTTCTCAGAC
TTATGGGTGGCTTCAAAAACCTGTCCCCTTCGTTCAGCCGCCCCGCCAGCACGATTGCAAGGCCCAACATGGCCCTCAGC
AAGAGGGCGGCTGACAGCCTGCAGCAGAATCTGCAGCGGGACTACGACCGGGCCATGAGATGGAAGTACAGCCGGGGAGC
TGGCCTCGGCTTCTCCACCGCCCCCAACAAGATCTTTTACATTGACAGGAACGCTTCCAAGTCAGTCAAGCTGGAAGATT
AA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 3 .83 RPM |
| SRP007412_cerebellum | 4 .34 RPM |
| SRP007412_heart | 2 .07 RPM |
| SRP007412_kidney | 4 .03 RPM |
| SRP007412_liver | 3 .83 RPM |
| SRP007412_testis | 4 .64 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000018032 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000009625 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000103550 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000005673 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000002707 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000012496 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000010065 | ortholog_one2many | 4 retrogenes | |
| Pongo abelii | ENSPPYG00000007151 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_767 | 80.74 | 82.78 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_924 | 85.59 | 74.83 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_2360 | 80.86 | 85.43 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000007836 retrocopies