RetrogeneDB ID:

retro_ogar_1481

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873549.1:1212210..1213555(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000010065
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_1481
GGGCTGCCAGAGAAGAAAAAGAAGAGGAAGGTGATCAAAGAACCAGAGACTCAATACTCAGTTTTGAACAGTGACAATTG
TTTTGCCAATGTTTCTCCCATAAGAGCCACATCCCCTCTAAGATTGTGGTCCAAGGGGAGACACCTGAGATGCCTCTAGT
GAAGAAAAAGAAAAAGAAGAAGGGTTATAGCACCCCTTGTGAGGAGCAGCTAGAACCTGAGACCACCTGTCATGCTAAAC
AGACAGAGAAGTCACCCAGCCCCAGGAAGCAGGTGTTTAGTCTCCCACGGAATTTCTCCATGGGGAGAAGAAAAAGAAGA
GGAAGTCCTCCTTACCTCCAACCATGTCCCATGGGTTGGAGGCAAAGACCTCTCCAGACCCCAGACAGAATGAGGAGGTG
GTGACCAGAGTTGGCAAGAAGGTCAAAAAACACAAGAAGGATAAAAAGGCCCAGGACCCCGCAGCCTTTTCAGTCTAGGA
CCCTTGGTTCTGCGATGCTGGGGCCGGGTACACCTGCTCAGTGGGGAGGGAAGGTAAGGAGCAGGCAGCCCCAGGGCAGA
AACGGAAGCAGGGGAGTGCCAGGGAACCGAGCAGGAAAGGGAAGAAGAAAAAAAAGATCCACCAGGAGGGAGACACCCTC
CCAGGGCACTCCAGGCTCTCCGGTCCACGCAGAGCAGTCCTGGGAAGGAAGTCGAATGAGGCCAGTTAAAATTGATGCTC
CAGAATACATCCCCCTAGGAGATGGCCCCGAGGCACCAGCAAAGGAAAAATCCAAGAAGAAGGTAGAGCAGCCAGGCATG
GAGGAGGTGGCTCTGAAAGGGAAGCAGAATAAGAGGAAGAAAGACAGCAGAATAAGAGGAAGAAAGACAGTAGTAGGAGA
CCCTTGGGAGGAGGATCCAGACACAGACCTGGAGGTGGTGTCGGAAAAGAAAGGGAACGCGGACGAGGCGCACACTGACC
AGGGGAGGCAAAGGCCTTGCGAGAAGAGACTGACCGTGAGTCGCGCAAAACGGAAACTCCGAAACCAGCAAGTGACGGGA
ACCCAGTTTGGCCAGTGGGATACTGCTGGTTTTGAAAATGAGGAACAGAAACTGAAATTCCTCAAACTTATGGGTGTCTT
TAAAAATCTGTCCCCTTCATTCAGCCGGCCCCCTAGCATGGCTGGAAGGCCCAACGTGGCCCTCAACAAGAAGGCAGCTG
ACACTCAGCAGCAGAACTTGCAACCGGACTACGACTGGGCCATGAGCTGAAGTACCAGCCGAGGAGCTGGCCTTGGCTTC
TCTAATGCTGCAGGCAAAATCTTTTATATTGACAGAAACGCTTCTAAATCATCAAGTTTGAAGAT

ORF - retro_ogar_1481 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 79.13 %
Parental protein coverage: 97.39 %
Number of stop codons detected: 3
Number of frameshifts detected 8


Retrocopy - Parental Gene Alignment:

ParentalGLPEKKKKKKKVIKEPETQYSVLNSNNCFANVSPIRATSP-PKIMVQGETPEMPLVKKKKKKKGYSTPCE
GLPEKKKK.K.VIKEPETQYSVLNS.NCFANVSPIRATSP..KI.VQGETPEMPLVKKKKKKKGYSTPCE
RetrocopyGLPEKKKKRK-VIKEPETQYSVLNSDNCFANVSPIRATSP<SKIVVQGETPEMPLVKKKKKKKGYSTPCE
ParentalEQLEPETTCHARQTEKSPS-PRKQ-VLSHTEFLRGEKKKKRKSSLPPTMSHGLGAKTSPDPRQNEEVATR
EQLEPETTCHA.QTEKSPS.P....V.S.TEFL.GEKKKKRKSSLPPTMSHGL.AKTSPDPRQNEEV.TR
RetrocopyEQLEPETTCHAKQTEKSPS<PQEAGV*SPTEFLHGEKKKKRKSSLPPTMSHGLEAKTSPDPRQNEEVVTR
ParentalVGKKVKKHKKDKKAQDPAAFSVQDPWFCNAGDGYTCSVGREGKEQAAPGQKRKQGSAREPSGKGKKKKKI
VGKKVKKHKKDKKAQDPAAFSV.DPWFC.AG.GYTCSVGREGKEQAAPGQKRKQGSAREPS.KGKK...I
RetrocopyVGKKVKKHKKDKKAQDPAAFSV*DPWFCDAGAGYTCSVGREGKEQAAPGQKRKQGSAREPSRKGKKXXXI
ParentalYQEGDTLLGHSKLS-RSTESSPRK-GSRMKPVKIDAPEYIPLGDG---PKAPAKKKMKSKKKVEQPVMEE
.QEGDTL.GHS.LS.RST.SSP.K.GSRM.PVKIDAPEYIPLGDG...P.....KK.......E......
RetrocopyHQEGDTLPGHSRLS<RSTQSSPGK<GSRMRPVKIDAPEYIPLGDGPEAPAKEKSKKKVEQPGMEEVALKG
ParentalVALKRKKKKKRKKDSGVVGDPWKEDPDPDLEVVLEKKGNMDEAHIDQVRR-KALQEEIDRESGKTET-SE
.................VGDPW.EDPD.DLEVV.EKKGN.DEAH.DQ.R..KAL.EE.DRES.KTET.SE
RetrocopyXXXXXXXXXXXXXXXXXVGDPWEEDPDTDLEVVSEKKGNADEAHTDQGRQ<KALREETDRESRKTET<SE
ParentalTRK-WTGTQFGQWDTAGFENEEQKVKFLKLMGGFKNLSPSFSRPPSMAGRPNMALNKKAADTLQQNLQRD
T.K..TGTQFGQWDTAGFENEEQK.KFLKLMG.FKNLSPSFSRPPSMAGRPN.ALNKKAADT.QQNLQ.D
RetrocopyTSK<VTGTQFGQWDTAGFENEEQKLKFLKLMGVFKNLSPSFSRPPSMAGRPNVALNKKAADTQQQNLQPD
ParentalYDRAMSWKYSRGAGLGFSNAADKIFYIDRNASKS-IKFED
YD.AMS...SRGAGLGFSNAA.KIFYIDRNASKS.IKFED
RetrocopyYDWAMS*STSRGAGLGFSNAAGKIFYIDRNASKS<IKFED

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_1481 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 9 parental genes, and 21 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000180322 retrocopies
Callithrix jacchus ENSCJAG000000096251 retrocopy
Homo sapiens ENSG000001035503 retrocopies
Gorilla gorilla ENSGGOG000000056731 retrocopy
Macaca mulatta ENSMMUG000000027072 retrocopies
Nomascus leucogenys ENSNLEG000000124962 retrocopies
Otolemur garnettii ENSOGAG00000010065 4 retrocopies
Pongo abelii ENSPPYG000000071513 retrocopies
Pan troglodytes ENSPTRG000000078363 retrocopies



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