Parental gene: | KNOP1, ENSG00000103550 |
| Aliases: | None |
| Description: | lysine-rich nucleolar protein 1 [Source:HGNC Symbol;Acc:34404] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 16:19714901..19729557(-) |
>ENSG00000103550
ATGATCACCAAGACACACAAAGTAGACCTTGGGCTCCCAGAGAAGAAAAAGAAGAAGAAAGTGGTCAAAGAACCAGAGAC
TCGATACTCAGTTTTAAACAATGATGATTACTTTGCTGATGTTTCTCCTTTAAGAGCTACATCCCCCTCTAAGAGTGTGG
CCCATGGGCAGGCACCTGAGATGCCTCTAGTGAAGAAAAAGAAGAAGAAAAAGAAGGGTGTCAGCACCCTTTGCGAGGAG
CATGTAGAACCTGAGACCACGCTGCCTGCTAGACGGACAGAGAAGTCACCCAGCCTCAGGAAGCAGGTGTTTGGCCACTT
GGAGTTCCTCAGTGGGGAAAAGAAAAATAAGAAGTCACCTCTAGCCATGTCCCATGCCTCTGGGGTGAAAACCTCCCCAG
ACCCTAGACAGGGTGAGGAGGAAACCAGAGTTGGCAAGAAGCTCAAAAAACACAAGAAGGAAAAAAAGGGGGCCCAGGAC
CCCACAGCCTTCTCGGTCCAGGACCCTTGGTTCTGTGAGGCCAGGGAGGCCAGGGATGTTGGGGACACTTGCTCAGTGGG
GAAGAAGGATGAGGAACAGGCAGCCTTGGGGCAGAAACGGAAGCGGAAGAGCCCCAGAGAACACAATGGGAAGGTGAAGA
AGAAAAAAAAAATCCACCAGGAGGGAGATGCCCTCCCAGGCCACTCCAAGCCCTCCAGGTCCATGGAGAGCAGCCCTAGG
AAAGGAAGTAAAAAGAAGCCAGTCAAAGTTGAGGCTCCGGAATACATCCCCATAAGTGATGACCCTAAGGCCTCCGCAAA
GAAAAAGATGAAGTCCAAAAAGAAGGTAGAGCAGCCAGTCATCGAGGAGCCAGCTCTGAAAAGGAAGAAAAAGAAGAAGA
GGAAAGAGAGTGGGGTAGCAGGAGACCCTTGGAAGGAGGAAACAGACACGGACTTAGAGGTGGTGTTGGAAAAAAAAGGC
AACATGGATGAGGCGCACATAGACCAGGTGAGGCGAAAGGCCTTGCAAGAAGAGATCGATCGCGAGTCAGGCAAAACGGA
AGCTTCTGAAACCAGGAAGTGGACGGGAACCCAGTTTGGCCAGTGGGATACTGCTGGTTTTGAGAACGAGGACCAAAAAC
TGAAATTTCTCAGACTTATGGGTGGCTTCAAAAACCTGTCCCCTTCGTTCAGCCGCCCCGCCAGCACGATTGCAAGGCCC
AACATGGCCCTCGGCAAGAAGGCGGCTGACAGCCTGCAGCAGAATCTGCAGCGGGACTACGACCGGGCCATGAGCTGGAA
GTACAGCCGGGGAGCCGGCCTCGGCTTCTCCACCGCCCCCAACAAGATCTTTTACATTGACAGGAACGCTTCCAAGTCAG
TCAAGCTGGAAGATTAA
ATGATCACCAAGACACACAAAGTAGACCTTGGGCTCCCAGAGAAGAAAAAGAAGAAGAAAGTGGTCAAAGAACCAGAGAC
TCGATACTCAGTTTTAAACAATGATGATTACTTTGCTGATGTTTCTCCTTTAAGAGCTACATCCCCCTCTAAGAGTGTGG
CCCATGGGCAGGCACCTGAGATGCCTCTAGTGAAGAAAAAGAAGAAGAAAAAGAAGGGTGTCAGCACCCTTTGCGAGGAG
CATGTAGAACCTGAGACCACGCTGCCTGCTAGACGGACAGAGAAGTCACCCAGCCTCAGGAAGCAGGTGTTTGGCCACTT
GGAGTTCCTCAGTGGGGAAAAGAAAAATAAGAAGTCACCTCTAGCCATGTCCCATGCCTCTGGGGTGAAAACCTCCCCAG
ACCCTAGACAGGGTGAGGAGGAAACCAGAGTTGGCAAGAAGCTCAAAAAACACAAGAAGGAAAAAAAGGGGGCCCAGGAC
CCCACAGCCTTCTCGGTCCAGGACCCTTGGTTCTGTGAGGCCAGGGAGGCCAGGGATGTTGGGGACACTTGCTCAGTGGG
GAAGAAGGATGAGGAACAGGCAGCCTTGGGGCAGAAACGGAAGCGGAAGAGCCCCAGAGAACACAATGGGAAGGTGAAGA
AGAAAAAAAAAATCCACCAGGAGGGAGATGCCCTCCCAGGCCACTCCAAGCCCTCCAGGTCCATGGAGAGCAGCCCTAGG
AAAGGAAGTAAAAAGAAGCCAGTCAAAGTTGAGGCTCCGGAATACATCCCCATAAGTGATGACCCTAAGGCCTCCGCAAA
GAAAAAGATGAAGTCCAAAAAGAAGGTAGAGCAGCCAGTCATCGAGGAGCCAGCTCTGAAAAGGAAGAAAAAGAAGAAGA
GGAAAGAGAGTGGGGTAGCAGGAGACCCTTGGAAGGAGGAAACAGACACGGACTTAGAGGTGGTGTTGGAAAAAAAAGGC
AACATGGATGAGGCGCACATAGACCAGGTGAGGCGAAAGGCCTTGCAAGAAGAGATCGATCGCGAGTCAGGCAAAACGGA
AGCTTCTGAAACCAGGAAGTGGACGGGAACCCAGTTTGGCCAGTGGGATACTGCTGGTTTTGAGAACGAGGACCAAAAAC
TGAAATTTCTCAGACTTATGGGTGGCTTCAAAAACCTGTCCCCTTCGTTCAGCCGCCCCGCCAGCACGATTGCAAGGCCC
AACATGGCCCTCGGCAAGAAGGCGGCTGACAGCCTGCAGCAGAATCTGCAGCGGGACTACGACCGGGCCATGAGCTGGAA
GTACAGCCGGGGAGCCGGCCTCGGCTTCTCCACCGCCCCCAACAAGATCTTTTACATTGACAGGAACGCTTCCAAGTCAG
TCAAGCTGGAAGATTAA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 3 .67 RPM |
| bodymap2_lung | 1 .79 RPM |
| bodymap2_breast | 6 .17 RPM |
| bodymap2_adipose | 4 .77 RPM |
| bodymap2_adrenal | 8 .43 RPM |
| bodymap2_skeletal_muscle | 2 .29 RPM |
| bodymap2_thyroid | 7 .85 RPM |
| bodymap2_prostate | 5 .54 RPM |
| bodymap2_colon | 2 .88 RPM |
| bodymap2_testis | 7 .15 RPM |
| bodymap2_brain | 7 .81 RPM |
| bodymap2_heart | 2 .71 RPM |
| bodymap2_white_blood_cells | 4 .11 RPM |
| bodymap2_lymph_node | 3 .65 RPM |
| bodymap2_ovary | 8 .66 RPM |
| bodymap2_kidney | 5 .71 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000018032 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000009625 | ortholog_one2many | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000005673 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000002707 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000012496 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000010065 | ortholog_one2many | 4 retrogenes | |
| Pongo abelii | ENSPPYG00000007151 | ortholog_one2one | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000007836 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_979 | 83.42 | 83.62 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_3487 | 83.12 | 85.59 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_hsap_4007 | 81.47 | 84.50 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000103550 retrocopies