Parental gene: | KNOP1, ENSPPYG00000007151 |
| Aliases: | None |
| Description: | lysine-rich nucleolar protein 1 [Source:HGNC Symbol;Acc:34404] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 16:19114554..19126293(-) |
>ENSPPYG00000007151
ATGGCCGCGGTTTCCACGGTAACCGCGTTCGCCGGAAGGCCGCGACCCGGAAGAAGCCGGAACCCGAGAGGGTGGGCCGG
CGACTCGAAGTGGACTTCCGGGTCACGGCGGAGCGGGCTCTCACGTGGAGGCGGGGAAATTTCGCCCACCGGAATGATCA
CCAAGACACACAAAGTAGACCCTGGGCTCCCAGAGAAGAAAAAGAAAAAGAAAGTGGTCAAAGAACCAGAGACTCGATAC
TCAGTTTTAAACGATGATTACTTTGCCGATATTTCTCCTGTAAGAGCCACATCCCCCTCTAAGAGCGTGGCCCATGGGCA
GGCACCTGAGATGCCTCTAGTGAAGAAAAAGAAGAAGAAAAAGAAGGGTGTCAGCACCCTTTGCGAGGAGCATGTAGAAC
CTGAGACCACGCTGCCTGCCAGACGGACAGAGAAGTCACCCAGCTCCAGGAAGCAGGTGCTTGGCCACTTGGAGTTCCTT
AGTGGGGAGAAGAAAAAGAAGAAGTCACCTCTGGCCATGTCCCATGCCTCTGGGGTGAAAACCTCTGCAGACCCTAGACA
GGGTGAGGAGGAAACCAGAGTTGGCAAGAAGCTCAAAAAACACAAGAAGGAAAAAAAGGGAGCCCAGGACCCCACAGCCT
TCTCAGTCCAGGACCCTTGGTTCTGCGAGGCCAGGGAGGCCAGGGATGTTGGGGACACTTGCTCAGTGGGGAAGAAGGAT
GAGGAACAGGCAGCCTTGGGGCAGAAACGGAAGCGGAAGAGCCCCAGAGAACACAATGGGAAGGTGAAGAAGAAAAAAAA
AATCCACCAGGAGGGAGACGCCCTCCCAGGCCACTCCAAGACCTCTAGGTCCATGGAGAGCAGCCCTAGGAAAGGAAGTA
AAAAGAAGCCAGTCAAAGTTGAGGCTCCGGAATACATCCCCATAAGTGATGACCCTAAGGCCTCCACAAAGAAAAAGATG
AAGTCCAAAAAGAAGGTAGAGCAGCCAGTCATCGAGGAGCCAGCTCTGAAAAGGAAGAAAAAGAAGAAGAGGAAAGAGAG
TGGGGTAGCAGGAGACCCTTGGAAGGAGGAAACAGACACGGACTTAGAGGTGGTGTTGGAAAAAAAAGGCAACATGGATG
AGGCGCACATAGACCAGGTGAGGCGAAAGGCCTTGCAAGAAGAGATCGATCGCGAGTCAGGCAAAACGGAAGCTTCTGAA
ACCAGGAAGTGGACGGGAACCCATTTTCAGTGGGATACTGCTGGTTTTGAGAACGAGGACCAGAAACTGAAATTTCTCAG
ACTTATGGGTGGCTTCAAAAACCTGTCCCCTTCGTTCAGCCGCCCCGCCGGCACGATTGCAAGGCCCAACATGGCCCTCG
GCAAGAAGGCGGCTGACAGCCTGCAGCAGAATCTGCAGCGGGACTACGACCGGGCCATGAGCTGGAAGTACAGCCGGGGA
GCCGGCCTCGGCTTCTCCACCGCCCCCAACAAGATCTTTTACATTGACAGGAACGCTTCCAAGTCAGTCAAGCTGGAAGA
TTAA
ATGGCCGCGGTTTCCACGGTAACCGCGTTCGCCGGAAGGCCGCGACCCGGAAGAAGCCGGAACCCGAGAGGGTGGGCCGG
CGACTCGAAGTGGACTTCCGGGTCACGGCGGAGCGGGCTCTCACGTGGAGGCGGGGAAATTTCGCCCACCGGAATGATCA
CCAAGACACACAAAGTAGACCCTGGGCTCCCAGAGAAGAAAAAGAAAAAGAAAGTGGTCAAAGAACCAGAGACTCGATAC
TCAGTTTTAAACGATGATTACTTTGCCGATATTTCTCCTGTAAGAGCCACATCCCCCTCTAAGAGCGTGGCCCATGGGCA
GGCACCTGAGATGCCTCTAGTGAAGAAAAAGAAGAAGAAAAAGAAGGGTGTCAGCACCCTTTGCGAGGAGCATGTAGAAC
CTGAGACCACGCTGCCTGCCAGACGGACAGAGAAGTCACCCAGCTCCAGGAAGCAGGTGCTTGGCCACTTGGAGTTCCTT
AGTGGGGAGAAGAAAAAGAAGAAGTCACCTCTGGCCATGTCCCATGCCTCTGGGGTGAAAACCTCTGCAGACCCTAGACA
GGGTGAGGAGGAAACCAGAGTTGGCAAGAAGCTCAAAAAACACAAGAAGGAAAAAAAGGGAGCCCAGGACCCCACAGCCT
TCTCAGTCCAGGACCCTTGGTTCTGCGAGGCCAGGGAGGCCAGGGATGTTGGGGACACTTGCTCAGTGGGGAAGAAGGAT
GAGGAACAGGCAGCCTTGGGGCAGAAACGGAAGCGGAAGAGCCCCAGAGAACACAATGGGAAGGTGAAGAAGAAAAAAAA
AATCCACCAGGAGGGAGACGCCCTCCCAGGCCACTCCAAGACCTCTAGGTCCATGGAGAGCAGCCCTAGGAAAGGAAGTA
AAAAGAAGCCAGTCAAAGTTGAGGCTCCGGAATACATCCCCATAAGTGATGACCCTAAGGCCTCCACAAAGAAAAAGATG
AAGTCCAAAAAGAAGGTAGAGCAGCCAGTCATCGAGGAGCCAGCTCTGAAAAGGAAGAAAAAGAAGAAGAGGAAAGAGAG
TGGGGTAGCAGGAGACCCTTGGAAGGAGGAAACAGACACGGACTTAGAGGTGGTGTTGGAAAAAAAAGGCAACATGGATG
AGGCGCACATAGACCAGGTGAGGCGAAAGGCCTTGCAAGAAGAGATCGATCGCGAGTCAGGCAAAACGGAAGCTTCTGAA
ACCAGGAAGTGGACGGGAACCCATTTTCAGTGGGATACTGCTGGTTTTGAGAACGAGGACCAGAAACTGAAATTTCTCAG
ACTTATGGGTGGCTTCAAAAACCTGTCCCCTTCGTTCAGCCGCCCCGCCGGCACGATTGCAAGGCCCAACATGGCCCTCG
GCAAGAAGGCGGCTGACAGCCTGCAGCAGAATCTGCAGCGGGACTACGACCGGGCCATGAGCTGGAAGTACAGCCGGGGA
GCCGGCCTCGGCTTCTCCACCGCCCCCAACAAGATCTTTTACATTGACAGGAACGCTTCCAAGTCAGTCAAGCTGGAAGA
TTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 4 .92 RPM |
| SRP007412_cerebellum | 8 .76 RPM |
| SRP007412_heart | 3 .16 RPM |
| SRP007412_kidney | 6 .86 RPM |
| SRP007412_liver | 6 .46 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000018032 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000009625 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000103550 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000005673 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000002707 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000012496 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000010065 | ortholog_one2many | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000007836 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_828 | 81.98 | 74.95 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_920 | 61.62 | 73.77 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_3293 | 79.10 | 77.91 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000007151 retrocopies