RetrogeneDB ID: | retro_itri_1657 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393611.1:463401..463809(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARPP19 | ||
Ensembl ID: | ENSSTOG00000003677 | ||
Aliases: | None | ||
Description: | cAMP-regulated phosphoprotein, 19kDa [Source:HGNC Symbol;Acc:16967] |
Percent Identity: | 78.57 % |
Parental protein coverage: | 93.06 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | PLKERGSVRSSRS-RRSAAGQNA-MSAEVPEAASAEEQKEME-DKVTSPEKAEEAK-LKARYPHLGQKPG |
PLKERGSVR.SRS.R....G....MS.EVPE...AEEQKEME.DKVT.P.KAEEAK.LKARYPHLGQKP. | |
Retrocopy | PLKERGSVRLSRS>RGAQLGRGSTMSTEVPEVTPAEEQKEMEEDKVTNPDKAEEAK>LKARYPHLGQKPE |
Parental | GSDFLRKRLQKGQKYFDSGDYNM-AKAKMKNKQLP-TAAPDKTEVTGDHIPTPQDLPQRKPSLVASKLAG |
..DFLRKRLQKGQKYFDSGD.NM.AKAK..NKQLP..A.PDK.EVTGDHIPTP.DLPQRKPSLVASKLAG | |
Retrocopy | RLDFLRKRLQKGQKYFDSGDCNM<AKAKTNNKQLP<PAGPDKKEVTGDHIPTP*DLPQRKPSLVASKLAG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000011022 | 5 retrocopies | |
Canis familiaris | ENSCAFG00000032515 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000004474 | 9 retrocopies | |
Dipodomys ordii | ENSDORG00000011321 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000015550 | 1 retrocopy | |
Homo sapiens | ENSG00000128989 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000025250 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013865 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006487 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000042183 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000004618 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000003677 | 7 retrocopies |
retro_itri_1075, retro_itri_1290, retro_itri_1339, retro_itri_1643, retro_itri_1657 , retro_itri_1865, retro_itri_594,
|
Tursiops truncatus | ENSTTRG00000004804 | 1 retrocopy |