RetrogeneDB ID: | retro_itri_594 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393304.1:8753542..8753909(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARPP19 | ||
Ensembl ID: | ENSSTOG00000003677 | ||
Aliases: | None | ||
Description: | cAMP-regulated phosphoprotein, 19kDa [Source:HGNC Symbol;Acc:16967] |
Percent Identity: | 74.19 % |
Parental protein coverage: | 85.42 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | RSRRSAAGQNAMSAEVPEAASAEEQKEMEDKVTSPEKAEEAKLKARYPHLGQKPGG-SDFLRKRLQKGQK |
R.R..A....A.....P.AASAEEQKEMEDK.TS.EKAE.AKLKAR..HL.Q.PGG...FLRK.LQKG.K | |
Retrocopy | RQRTGATHREAYVHGSPQAASAEEQKEMEDKATSLEKAE*AKLKARFSHLSQNPGG>DLFLRK*LQKG*K |
Parental | YFDSGDYNMAKAKMKNKQLPTAAPDKTEVTGDHIPTPQDLPQRKPSLVASKLAG |
YF.SGDYNMAKAKMKNKQLP.AAPDKTEVTGDHI.T.QDLP..KPSLV.SKLAG | |
Retrocopy | YFNSGDYNMAKAKMKNKQLPLAAPDKTEVTGDHILTLQDLP*WKPSLV-SKLAG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000011022 | 5 retrocopies | |
Canis familiaris | ENSCAFG00000032515 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000004474 | 9 retrocopies | |
Dipodomys ordii | ENSDORG00000011321 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000015550 | 1 retrocopy | |
Homo sapiens | ENSG00000128989 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000025250 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013865 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006487 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000042183 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000004618 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000003677 | 7 retrocopies |
retro_itri_1075, retro_itri_1290, retro_itri_1339, retro_itri_1643, retro_itri_1657, retro_itri_1865, retro_itri_594 ,
|
Tursiops truncatus | ENSTTRG00000004804 | 1 retrocopy |