RetrogeneDB ID: | retro_itri_1774 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393753.1:31905..32218(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GOLGA7 | ||
Ensembl ID: | ENSSTOG00000004024 | ||
Aliases: | None | ||
Description: | golgin A7 [Source:HGNC Symbol;Acc:24876] |
Percent Identity: | 74.77 % |
Parental protein coverage: | 76.64 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | ELENRIDRQQFEETVRTLNNLYAEAEKLGGQSYLEGCLACLTAYTIFLCMETHYEKVLKKVSKYIQEQNE |
..EN...RQQF.ETV.TL...YAE.EKLG.Q.YLEG.LACLT.YTIFLCMETH.EKVLKKVS.YIQEQNE | |
Retrocopy | QMENQNNRQQFLETVGTLKSIYAETEKLGSQLYLEGYLACLTTYTIFLCMETH*EKVLKKVSEYIQEQNE |
Parental | KIYAP-QGLLLTDPIERGLRVIE-ITIYEDRGMSSGR |
K.YAP.QGLLL.D.I.RGLR.IE..TIYEDRG..SGR | |
Retrocopy | KMYAP<QGLLLIDSIGRGLRLIE<MTIYEDRGKNSGR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |