RetrogeneDB ID:

retro_ogar_3484

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873902.1:143718..144126(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:GOLGA7
Ensembl ID:ENSOGAG00000003707
Aliases:None
Description:golgin A7 [Source:HGNC Symbol;Acc:24876]


Retrocopy-Parental alignment summary:






>retro_ogar_3484
AGGCTGCAGCAGGCACCAGTGTCCAGGAAGATATTCATTCAGGGAGACTACAGCAGTGGCACATGCTGCCAATTCCAGAC
CAAGTTCACCACAGAGCTGTAACACCAGATTGATAGGCAGCAGTTTGAAGAAACAGTTCAAACTCTAAATAACCTTTATG
CAGAAGTTGAGAAGGTTGGGGGCCAATCCTATCTTGAAGGCTGTTTAGCTTGTTTAACAGCATATACCATCTTCTTATGC
ATGGAAACTCATTATGAGAAGGTTATGAAGAAAGTCTCCAAACACATTCAAGAGCAGAATGAGAAGATATATGCTCCCCA
AGGCCTATTCCTGACAGATCCTATTGAGGGAGGATTTCAAATTACTAAAATCACCATTTATGAAGACAGAGGCATGAGAA
GTGGAAGA

ORF - retro_ogar_3484 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 82.35 %
Parental protein coverage: 99.27 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalRPQQAPVCGKVFIQRDYSSGTRCQFQTKFPAELENRIDRQQFEETVRTLNNLYAEAEKLGGQSYLEGCLA
R.QQAPV..K.FIQ.DYSSGT.CQFQTKF..EL...IDRQQFEETV.TLNNLYAE.EK.GGQSYLEGCLA
RetrocopyRLQQAPVSRKIFIQGDYSSGTCCQFQTKFTTEL*HQIDRQQFEETVQTLNNLYAEVEKVGGQSYLEGCLA
ParentalCLTAYTIFLCMETHYEKVLKKVSKYIQEQNEKIYAPQGLLLTDPIERGLRVIEITIYEDRGMSSGR
CLTAYTIFLCMETHYEKV.KKVSK.IQEQNEKIYAPQGL.LTDPIE.G.....ITIYEDRGM.SGR
RetrocopyCLTAYTIFLCMETHYEKVMKKVSKHIQEQNEKIYAPQGLFLTDPIEGGFQITKITIYEDRGMRSGR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_3484 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 20 parental genes, and 35 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000027411 retrocopy
Dasypus novemcinctus ENSDNOG000000099762 retrocopies
Erinaceus europaeus ENSEEUG000000136991 retrocopy
Felis catus ENSFCAG000000187403 retrocopies
Homo sapiens ENSG000001475331 retrocopy
Loxodonta africana ENSLAFG000000091461 retrocopy
Microcebus murinus ENSMICG000000009401 retrocopy
Myotis lucifugus ENSMLUG000000145162 retrocopies
Monodelphis domestica ENSMODG000000104742 retrocopies
Mus musculus ENSMUSG000000153413 retrocopies
Nomascus leucogenys ENSNLEG000000125771 retrocopy
Oryctolagus cuniculus ENSOCUG000000075461 retrocopy
Otolemur garnettii ENSOGAG00000003707 2 retrocopies
retro_ogar_2968, retro_ogar_3484 ,
Pongo abelii ENSPPYG000000185421 retrocopy
Pan troglodytes ENSPTRG000000201931 retrocopy
Rattus norvegicus ENSRNOG000000179561 retrocopy
Sarcophilus harrisii ENSSHAG000000160942 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000040243 retrocopies
Tarsius syrichta ENSTSYG000000051973 retrocopies
Tursiops truncatus ENSTTRG000000035573 retrocopies



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