Parental gene:

GOLGA7, ENSFCAG00000018740

Aliases:None
Description:golgin A7 [Source:HGNC Symbol;Acc:24876]
Organism:Cat (Felis catus)
Coordinates:B1:42444576..42457830(-)


>ENSFCAG00000018740
CGCGCCCGTCCTGTCCTCGCCATGAGGCCGCAGCAGGCGCCGGTGTCCGGGAAGGTATTCATTCAGCGAGACTACAGCAG
TGGCACACGCTGCCAGTTCCAGACCAAGTTCCCCGCGGAGCTGGAGAACCGGATTGATAGGCAGCAGTTTGAAGAAACAG
TTCGAACTCTAAATAACCTTTATGCAGAAGCAGAGAAGCTTGGGGGCCAATCATATCTTGAAGGCTGTTTGGCTTGCCTA
ACAGCCTACACCATCTTCTTATGCATGGAAACTCATTATGAGAAGGTTCTGAAGAAAGTGTCCAAATACATTCAAGAGCA
GAATGAGAAGATATATGCTCCCCAAGGCCTCCTCCTGACAGATCCCATTGAGAGAGGACTTCGAGTTATTGAAATCACCA
TTTATGAAGACAGAGGCATGAGCAGTGGGAGATAA

Library Parental gene expression (RPM)
SRP017611_liver 12 .64 RPM
SRP017611_kidney 14 .84 RPM
SRP017611_brain 37 .19 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002741 ortholog_one2one 1 retrogene
retro_amel_1785,
Dasypus novemcinctus ENSDNOG00000009976 ortholog_one2many 2 retrogenes
retro_dnov_194, retro_dnov_45,
Erinaceus europaeus ENSEEUG00000013699 ortholog_one2many 1 retrogene
retro_eeur_588,
Homo sapiens ENSG00000147533 ortholog_one2one 1 retrogene
retro_hsap_3862,
Loxodonta africana ENSLAFG00000009146 ortholog_one2one 1 retrogene
retro_lafr_273,
Microcebus murinus ENSMICG00000000940 ortholog_one2one 1 retrogene
retro_mmur_721,
Myotis lucifugus ENSMLUG00000014516 ortholog_one2one 2 retrogenes
retro_mluc_1348, retro_mluc_787,
Monodelphis domestica ENSMODG00000010474 ortholog_one2one 2 retrogenes
retro_mdom_1034, retro_mdom_1528,
Mus musculus ENSMUSG00000015341 ortholog_one2one 3 retrogenes
retro_mmus_2687, retro_mmus_312, retro_mmus_3572,
Nomascus leucogenys ENSNLEG00000012577 ortholog_one2one 1 retrogene
retro_nleu_3014,
Oryctolagus cuniculus ENSOCUG00000007546 ortholog_one2one 1 retrogene
retro_ocun_1503,
Otolemur garnettii ENSOGAG00000003707 ortholog_one2one 2 retrogenes
retro_ogar_2968, retro_ogar_3484,
Pongo abelii ENSPPYG00000018542 ortholog_one2one 1 retrogene
retro_pabe_276,
Pan troglodytes ENSPTRG00000020193 ortholog_one2one 1 retrogene
retro_ptro_2632,
Rattus norvegicus ENSRNOG00000017956 ortholog_one2one 1 retrogene
retro_rnor_2793,
Sarcophilus harrisii ENSSHAG00000016094 ortholog_one2many 2 retrogenes
retro_shar_123, retro_shar_626,
Ictidomys tridecemlineatus ENSSTOG00000004024 ortholog_one2one 3 retrogenes
retro_itri_1181, retro_itri_1774, retro_itri_359,
Tarsius syrichta ENSTSYG00000005197 ortholog_one2one 3 retrogenes
retro_tsyr_1835, retro_tsyr_359, retro_tsyr_714,
Tursiops truncatus ENSTTRG00000003557 ortholog_one2one 3 retrogenes
retro_ttru_1289, retro_ttru_1410, retro_ttru_516,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_975 63.64 88.89
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2. retro_fcat_1209 72.38 71.53
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3. retro_fcat_1958 88.19 99.31
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Download FASTA sequences of all ENSFCAG00000018740 retrocopies