RetrogeneDB ID: | retro_ocun_1503 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 9:36883639..36883942(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GOLGA7 | ||
Ensembl ID: | ENSOCUG00000007546 | ||
Aliases: | None | ||
Description: | golgin A7 [Source:HGNC Symbol;Acc:24876] |
Percent Identity: | 78.43 % |
Parental protein coverage: | 84.75 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | QIDRQQFEETVRTLNNLYAEAEKLGGQSYLEGCLACLTAYTIFLCMETHYEKVLKKVSKYIQEQNE--KI |
QIDRQ.FEE.VRTLNNL.A.A.KLGGQSYLEGCLACLTA.T.FLCMETHYE.VL.K.SKYIQEQNE.... | |
Retrocopy | QIDRQKFEEAVRTLNNL*AQAKKLGGQSYLEGCLACLTAHTAFLCMETHYENVL-KISKYIQEQNEI*NF |
Parental | YAPQGLLLTDPIERGLRVIEITIYEDRGLSSG |
...Q.LLLT.PIER.L.VI.ITIYEDRGLSSG | |
Retrocopy | CSLQVLLLTVPIERRLQVIGITIYEDRGLSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 27 .87 RPM |
SRP017611_kidney | 0 .00 RPM | 9 .32 RPM |
SRP017611_liver | 0 .00 RPM | 5 .16 RPM |