RetrogeneDB ID: | retro_lafr_700 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_31:9965680..9966261(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLMO2 | ||
Ensembl ID: | ENSLAFG00000000300 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.05 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPSVVGVDVLHRHVDPSGKLHSHRLLSTEWGLPSIVKSLIG |
M.IW.SEHVFDH.W.TVTTAAMQKYPNPMNPSV.G.DVLHRHVDPSG.LHSH.LLST...L.SI.KSLIG | |
Retrocopy | MMIWASEHVFDHQWQTVTTAAMQKYPNPMNPSVIGIDVLHRHVDPSG*LHSHQLLSTNRSLSSIAKSLIG |
Parental | AARTKTYVQEHSVVDPVERTMELKSTNISFTNMVSVDERLIYKPHPQDPEKTVLTQEAIITVKGVSLSSY |
AARTKTYV.EHSVVD..ERTMELKSTNISFTNMVSVDERLIYK.HP.DP..TVLTQ..IITVKGVSL.SY | |
Retrocopy | AARTKTYVREHSVVDHEERTMELKSTNISFTNMVSVDERLIYKSHPLDPGETVLTQVVIITVKGVSLRSY |
Parental | LEGLMA-STISSNANKGREAMEWVIRKLNAEIEELAASARGTMRTPMVAAAFVEK |
L.G.MA..TISSNANK..EAME.VI.KLNAEIEEL.ASARG.MRT.M.AAAFVEK | |
Retrocopy | LGGCMA<NTISSNANKD*EAME*VICKLNAEIEELTASARGNMRTQMAAAAFVEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000018905 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000014548 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000009651 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000000300 | 1 retrocopy |
retro_lafr_700 ,
|
Myotis lucifugus | ENSMLUG00000014907 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000007560 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000016608 | 5 retrocopies | |
Mus musculus | ENSMUSG00000016257 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000005621 | 8 retrocopies | |
Ochotona princeps | ENSOPRG00000002550 | 8 retrocopies | |
Rattus norvegicus | ENSRNOG00000046644 | 2 retrocopies | |
Sorex araneus | ENSSARG00000004671 | 2 retrocopies |