RetrogeneDB ID: | retro_dnov_2032 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_43332:9881..10290(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLMO2 | ||
Ensembl ID: | ENSDNOG00000014548 | ||
Aliases: | None | ||
Description: | slowmo homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:15892] |
Percent Identity: | 72.92 % |
Parental protein coverage: | 72.16 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | DRHIDPSRKLH-SHRLLSTEWRLPSIVKSLIGAARTKTYVQEHSVVDP-VERTMELKSTNISFTNMVSVD |
DRHI..S.......RLLSTEW.LPSIVKSLIG...TK.YVQEHSVVDP..ERTMEL..TNI.FT.M.SVD | |
Retrocopy | DRHIVSSG*IY<CRRLLSTEWGLPSIVKSLIGTTKTKIYVQEHSVVDP>KERTMELQRTNI*FTCMISVD |
Parental | ER-LIYKPHSQDPEKTVLTQEAIITVKGVSLSSYLEGLMASTISS-NANKGREAMEWVIHKLNAEIEELA |
E..LIYKPH.QDPEKT...QE.IITVKGVSLS..LEGLMASTISS...NKG.EAM.WVI.KLNAEIEE.. | |
Retrocopy | ET<LIYKPHFQDPEKT---QEVIITVKGVSLSRHLEGLMASTISS<KTNKGPEAMKWVILKLNAEIEEST |
Parental | ASAR |
A.AR | |
Retrocopy | ALAR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 58 .92 RPM |
SRP012922_cerebellum | 0 .00 RPM | 14 .16 RPM |
SRP012922_heart | 0 .00 RPM | 13 .46 RPM |
SRP012922_kidney | 0 .00 RPM | 15 .33 RPM |
SRP012922_liver | 0 .00 RPM | 26 .63 RPM |
SRP012922_lung | 0 .00 RPM | 31 .46 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 31 .85 RPM |
SRP012922_spleen | 0 .00 RPM | 32 .51 RPM |