RetrogeneDB ID: | retro_dnov_2311 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_62997:352..816(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLMO2 | ||
Ensembl ID: | ENSDNOG00000014548 | ||
Aliases: | None | ||
Description: | slowmo homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:15892] |
Percent Identity: | 68.99 % |
Parental protein coverage: | 79.9 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | DRHIDPSRKLHSHRLLSTEWRLPSIVKSLIGAARTKTYVQEH-SVVDPVERTMELKSTNISFTNMVSVDE |
DR..DPS.KLHS.RLLSTE..LPSIVK.LIG.A.TKTYVQEH..VVDP.ERTMELKST.ISF.NMVSV.E | |
Retrocopy | DRLTDPSGKLHSQRLLSTE*GLPSIVKYLIGEAKTKTYVQEH>LVVDPIERTMELKSTSISFANMVSVYE |
Parental | RLIYKPHS-QDPEKTVLTQ-EAIITVKGVSLSSYLEGLMASTISSNANKGREAMEWVIHKLNAEIEELAA |
R.I....S.....KT.LTQ..AIITVKGVS.SS.LEGLM.ST.SSNA..G.E..EWV.HK..A..EEL.A | |
Retrocopy | RHIQTTSS<KNQKKTILTQ<KAIITVKGVSFSSHLEGLMRSTTSSNADEGQETIEWVTHKSKAKTEELMA |
Parental | SARGSIRTPMAAAAFVEK |
..RGSIRT.M..AAF.EK | |
Retrocopy | LTRGSIRTIMSVAAFIEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 58 .92 RPM |
SRP012922_cerebellum | 0 .00 RPM | 14 .16 RPM |
SRP012922_heart | 0 .00 RPM | 13 .46 RPM |
SRP012922_kidney | 0 .00 RPM | 15 .33 RPM |
SRP012922_liver | 0 .00 RPM | 26 .63 RPM |
SRP012922_lung | 0 .00 RPM | 31 .46 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 31 .85 RPM |
SRP012922_spleen | 0 .00 RPM | 32 .51 RPM |