RetrogeneDB ID: | retro_dnov_1402 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_196448:308..728(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLMO2 | ||
Ensembl ID: | ENSDNOG00000014548 | ||
Aliases: | None | ||
Description: | slowmo homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:15892] |
Percent Identity: | 83.57 % |
Parental protein coverage: | 72.16 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LSTEWRLPSIVKSLIGAARTKTYVQEHSVVDPVERTMELKSTNISFTNMVSVDERLIYKPHSQDPEKTVL |
LS.EW.LPSIVKSLI...........HSVVDP.ERTMELKSTNISFTNMVSVDERLIYKP.SQDPEKTVL | |
Retrocopy | LSAEWGLPSIVKSLISVXXXXXXXXXHSVVDPGERTMELKSTNISFTNMVSVDERLIYKPYSQDPEKTVL |
Parental | TQEAIITVKGVSLSSYLEGLMASTISSNANKGREAMEWVIHKLNAEIEELAASARGSIRTPMAAAAFVEK |
TQ.AIITVKGVSLSSYLEGLMASTISSNA.KGR.AME.VIHKLNAEIE.LAASARGSIRTPM.AA.FVE. | |
Retrocopy | TQVAIITVKGVSLSSYLEGLMASTISSNATKGRQAMECVIHKLNAEIEKLAASARGSIRTPMNAAVFVEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 58 .92 RPM |
SRP012922_cerebellum | 0 .00 RPM | 14 .16 RPM |
SRP012922_heart | 0 .00 RPM | 13 .46 RPM |
SRP012922_kidney | 0 .00 RPM | 15 .33 RPM |
SRP012922_liver | 0 .00 RPM | 26 .63 RPM |
SRP012922_lung | 0 .00 RPM | 31 .46 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 31 .85 RPM |
SRP012922_spleen | 0 .00 RPM | 32 .51 RPM |