RetrogeneDB ID: | retro_ocun_455 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 11:71159566..71160010(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000005621 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.32 % |
Parental protein coverage: | 76.8 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | SGRLHSHRLLSTEWGLPSVVKSIIGAARTKTYVQEHSVVDPVERTMELKSTNISFTNMVSVDERLI-YKP |
SG.L.SHRLLSTEWGLPSVV.S..GAARTKTYVQEH.VVDP.ERTMELKSTN.S.TNMVSV.ERLI..KP | |
Retrocopy | SGELLSHRLLSTEWGLPSVVRSLTGAARTKTYVQEHAVVDPGERTMELKSTNMSSTNMVSVNERLI<RKP |
Parental | HPQDPEKTVLTQEAIITVKGVS-LSSYLEGLMA-STISSNANKGREAMEWVIHRLNAEIEELAASARGSI |
H..DP.KT..TQEAIITVK.V...SSYL.GL.A.S..SS.AN.GREAMEWVIH.LNAE.EELAA.AR.SI | |
Retrocopy | HRRDPKKTAITQEAIITVKAVA<FSSYLKGLVA<SRMSSDANTGREAMEWVIHTLNAEMEELAALARESI |
Parental | RAPMAAAAFAEK |
RA.M..AAF.EK | |
Retrocopy | RASMVVAAFVEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 15 .45 RPM |
SRP017611_kidney | 0 .00 RPM | 23 .41 RPM |
SRP017611_liver | 0 .00 RPM | 5 .70 RPM |