RetrogeneDB ID:

retro_lafr_86

Retrocopy
location
Organism:Elephant (Loxodonta africana)
Coordinates:scaffold_15:41483908..41484358(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSLAFG00000007337
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:CALM3
Ensembl ID:ENSLAFG00000001155
Aliases:None
Description:calmodulin 3 (phosphorylase kinase, delta) [Source:HGNC Symbol;Acc:1449]


Retrocopy-Parental alignment summary:






>retro_lafr_86
ATGGCCGACCAACTAACAGAGGAGCAGATCGCAGAGTACAAGGAGGCCTTCTCTCTGTTTGACAAGGATGGGGATGGCAC
CATCACCACCCGGGAGCTGGGCACCGTCATGCGGTCCCTGGGCCAGAACCCCACTGAGGCCGAACTCCAGGGCATGGTCA
AAGAGATCGACGCTGACGGCAACGGCACCATCGACTTCCCGGAGTTCCTGGGCATGATGGCGAGGAAGATGAAGGACACG
GACAGTGAGGAGGAGATCCGGGAGGCCTTCCGCGTATTCGACAAGGACGGCAATGGCTTTGTTAGCGCAGCTGAGCTGCG
GCACGTGATGACCAGGCTGGGGGAGAAGCTGAGTGATGAGGAGGTGGACGAGATGATCCGAGCAGCTGACACGGATGGAG
ATGGGCAAGTGAACTACGAGGAGTTCGTCCGCATGCTGGTCTCCAAATGA

ORF - retro_lafr_86 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.51 %
Parental protein coverage: 98.67 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT
ADQLTEEQIAE.KEAFSLFDKDGDGTITT.ELGTVMRSLGQNPTEAELQ.M..E.DADGNGTIDFPEFL.
RetrocopyADQLTEEQIAEYKEAFSLFDKDGDGTITTRELGTVMRSLGQNPTEAELQGMVKEIDADGNGTIDFPEFLG
ParentalMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE
MMARKMKDTDSEEEIREAFRVFDKDGNG..SAAELRHVMT.LGEKL.DEEVDEMIR.AD.DGDGQVNYEE
RetrocopyMMARKMKDTDSEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDEEVDEMIRAADTDGDGQVNYEE
ParentalFVQMMTAK
FV.M...K
RetrocopyFVRMLVSK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Loxodonta africana was not studied using RNA-Seq expression data.
Loxodonta africana was not studied using ChIP-Seq data.
Loxodonta africana was not studied using EST data.
Loxodonta africana was not studied using FANTOM5 data.
retro_lafr_86 was not experimentally validated.

Retrocopy orthology:
Loxodonta africana does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 25 parental genes, and 53 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000157121 retrocopy
Ailuropoda melanoleuca ENSAMEG000000085653 retrocopies
Bos taurus ENSBTAG000000145832 retrocopies
Canis familiaris ENSCAFG000000291514 retrocopies
Cavia porcellus ENSCPOG000000016121 retrocopy
Erinaceus europaeus ENSEEUG000000001401 retrocopy
Echinops telfairi ENSETEG000000093775 retrocopies
Felis catus ENSFCAG000000049951 retrocopy
Homo sapiens ENSG000001600143 retrocopies
Gorilla gorilla ENSGGOG000000002124 retrocopies
Loxodonta africana ENSLAFG00000001155 5 retrocopies
Loxodonta africana ENSLAFG000000029051 retrocopy
Loxodonta africana ENSLAFG000000098651 retrocopy
Microcebus murinus ENSMICG000000131803 retrocopies
Myotis lucifugus ENSMLUG000000105281 retrocopy
Monodelphis domestica ENSMODG000000092221 retrocopy
Mustela putorius furoENSMPUG000000052611 retrocopy
Mus musculus ENSMUSG000000193703 retrocopies
Nomascus leucogenys ENSNLEG000000027522 retrocopies
Otolemur garnettii ENSOGAG000000147642 retrocopies
Procavia capensis ENSPCAG000000057511 retrocopy
Petromyzon marinus ENSPMAG000000033231 retrocopy
Pongo abelii ENSPPYG000000101544 retrocopies
Pelodiscus sinensis ENSPSIG000000131731 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000143521 retrocopy



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